Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq144 188 6e-43 seq422 165 6e-36 >seq144 Length=115930 Score = 188 bits (208), Expect = 6e-43 Identities = 558/844 (66%), Gaps = 20/844 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||| || || || ||||| || |||||||| | || || |||||| | || ||||| Sbjct 55556 ATGTATAAGAAAGCCGAAGCATCGTTCTGGACCGCCGAAGAAGTCGATCTATCACAAGAC 55615 Query 61156 ATGAATGACTGGGAGCGTTTAT-CGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 || |||||| | || ||| |||||||| || ||||| ||||| || | || Sbjct 55616 GGACGCGATTGGGAGAATCTAAACGA-CGGTGAACGTCACTTCATCAAACACGTCCTCGC 55674 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||||||||| |||||| | ||| ||| | || Sbjct 55675 TTTCTTCGCCGCATCAGACGGTATCGTTTTAGAGAATCTCGCTTCACGATTCATGTCAGA 55734 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || ||||| |||||||||||| ||||||||| |||||||| || || |||||| | || Sbjct 55735 TGTTCAAGTCTCGGAGGCGCGTGCTTTCTACGGATTCCAGATCGCGATTGAGAATATTCA 55794 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 || |||||||| ||| | || ||||||||||||||| || || | || | Sbjct 55795 TTCCGAGATGTATAGTCTCCTTCTCGATACGTACATCAAAGATAACAAAGAGAGAGATCA 55854 Query 61395 ATTGTTCAATGCCATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGGCCTT 61451 | ||| || || || || || || ||| | ||| |||||| | ||||| | Sbjct 55855 TCTCTTCCGCGCGATTGAAACCATTCCTTGCGTCGCGAA---GAAAGCACAGTGGGCGAT 55911 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 | ||||||| | | | | || || | ||||||| | | || || || || Sbjct 55912 GACTTGGATCGACGG---ATCTCAAACCTTCGCTGAACGAATCGTAGCTTTCGCTTGCGT 55968 Query 61512 CGAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 || ||| | || ||| || | | | || | | ||||| ||| | |||||||| |||| Sbjct 55969 TGAAGGTATCTTCTTCTCCGGTAGCTTCTG-CTCCATCTTCTGGCTTAAGAAACGAGGAC 56027 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTG 61630 | ||||| ||| | |||||| || || ||||| || || ||||| ||| | || || | Sbjct 56028 TCATGCCTGGTTTAACCTTCTCTAACGAATTGATCTCTCGAGACGAAGGCTTACACTGCG 56087 Query 61631 ATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTG- 61689 |||| ||| | || | | ||||| | || || | | |||||||||| ||| Sbjct 56088 ATTTCGCTTGCCTCCTCT--ACACGCTCT-TGAGGACGAAGCTGACGGAGGAGCGCGTGA 56144 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 || | || || | || || || ||||| || ||| || ||||| | || Sbjct 56145 AGTCA-ATCGTCTGCGACGCCGTCGAGATCGAGAGAGAGTTTGTGTGCGACGCGCTTCCT 56203 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 | | | | || ||||| ||| | ||| ||||||||||| |||||||| || Sbjct 56204 TGCGCGTTGGTTGGGATGAACCGTGAGTTGATGAGTCAGTATATTGAGTTTGTTGCGGAT 56263 Query 61810 CGTCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868 | || || ||| ||||||| | || | || | || || || ||||||| Sbjct 56264 AGACTTTTGGGTGCGCTTGGGTACGGTAAGG-TGTACGGTGTGACTAATCCGTTTGATTG 56322 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | || ||||| | || || ||||| || |||||||||||||| || || || Sbjct 56323 GATGGAACTTATCTCGCTTCAGGGTAAAACGAACTTCTTCGAGAAACGTGTTGGTGATTA 56382 Query 61929 TCAA 61932 ||| Sbjct 56383 CCAA 56386 >seq422 Length=101449 Score = 165 bits (182), Expect = 6e-36 Identities = 578/887 (65%), Gaps = 19/887 (2%) Strand=Plus/Minus Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111 ||| ||| |||| |||||| ||| | ||| | || ||| ||||||||||| || | Sbjct 44352 TCGATTCTGTAT-GTTCCCAATCCAATATCCTCAGATATGGGAGATGTACAAAAAAGCCG 44294 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA-- 61169 ||||||| |||||||| | || || |||||| | || |||| | |||||||| Sbjct 44293 AAGCTTCATTCTGGACCGCCGAAGAAGTCGATCTATCTCAAGATAATCGCGACTGGGAAA 44234 Query 61170 --GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCT 61227 | || | ||| || |||| ||| ||||| ||||| || | || ||||| ||||| Sbjct 44233 ATTCCTTAAACGA-CGACGAACGACACTTCATCAAACACGTACTCGCCTTCTTCGCCGCA 44175 Query 61228 TCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCG 61287 || ||||| ||||| |||||| ||| || ||| | || || || | || Sbjct 44174 TCAGACGGCATCGTTTTAGAGAATCTATCAACCCGATTCATGTCCGATGTTCAGATCTCC 44115 Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 ||||| ||| || ||||| || || || || || |||||| | ||||| |||||||| Sbjct 44114 GAGGCTCGTGCCTTTTACGGATTTCAAATCGCGATTGAGAATATTCACTCTGAGATGTAT 44055 Query 61348 AGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCC 61407 ||| | || ||||||| || |||| || || | || | | ||| || Sbjct 44054 AGTCTCCTTCTCGATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCA 43995 Query 61408 ATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGT 61467 || || || || || || | | |||||| | ||||| | || |||||| | | Sbjct 43994 ATTGAAACCATTCCTTGTGTAACGAAGAAAGCACAATGGGCGATGAAATGGATCGACGG- 43936 Query 61468 ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 | | | || | ||||||| | |||| ||||| || || ||| | || ||| Sbjct 43935 --ATCTCAAAGCTTCGCTGAACGAATCGTGGCTTTTGCTTGCGTTGAAGGTATCTTCTTC 43878 Query 61528 AGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGAC 61586 || | | |||| | || || |||||||||||||| || | ||||| || || || Sbjct 43877 TCCGGTAGCTTTTG-TTCTATTTTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTTAC 43819 Query 61587 CTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCT 61646 ||| ||| || |||| ||| | ||||| || | ||||||||||| ||| |||| Sbjct 43818 TTTCTCCAACGAACTGATCTCAAGAGACGAAGGTCTTCATTGTGATTTCGCTTGTTTG-- 43761 Query 61647 ATTCAAACGCTATCTGGTGAATCGTCCGTCG-GAGGAGCGTGTGGGTGAGATTGTTCGTG 61705 ||| | | || ||| || || | | | || || |||||| |||||||||| Sbjct 43760 ATTTATAGTCT-TCT-TCGATTCAAGCTTAGTGAAGATCGTGTGAAATCAATTGTTCGTG 43703 Query 61706 AGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCA 61765 | ||||| || || || ||| || ||||| | || | | | | || | Sbjct 43702 ATGCGGTTGAGATTGAGAGAGAGTTTGTGTGCGACGCGCTTCCTTGCGCGTTGGTTGGGA 43643 Query 61766 TGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA-T 61824 |||| ||| | ||| || |||||||| ||||| || || || | |||| || Sbjct 43642 TGAACCGTGATTTGATGAGTCAATATATTGATTTTGTAGCGGATCGGTTATTGGGTGAGC 43583 Query 61825 TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCG 61884 |||||| | || | ||| | || || |||||||||| ||||| |||||||| Sbjct 43582 CTGGGTACGGTAAGG-TGTATGGTGTGAGTAATCCATTTGATTGGATGGAGTTGATTTCG 43524 Query 61885 CTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || | || || || ||||| || ||||| | || || || ||||| Sbjct 43523 CTTCAAGGTAAAACTAATTTCTTTGAGAAGAGAGTTGGTGAGTATCA 43477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397530157738400