Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq317 150 2e-31 seq1269 136 4e-27 seq1129 82.4 8e-11 >seq317 Length=114279 Score = 150 bits (166), Expect = 2e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||| ||||| ||||| ||||| || ||||| || ||||| || ||||||||| Sbjct 8598 TACGTCCTCGACGCAGCTGAGGAAGCTGGAATTGACTTGCCTTACTCATGCCGTGCTGGT 8657 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 ||||||| || ||||||||||| ||||| ||||||||| ||||| ||||| || | Sbjct 8658 TCTTGCTCAACCTGTGCTGGTAAAGTTGAGTCTGGTACTGTTGATCAGTCTGACCAGAGT 8717 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| |||||||| || ||| ||||| ||| || || || | |||||||| ||| Sbjct 8718 TTCCTTGATGATGAACAGATTGGTGAAGGATATGTTCTCACTTGTGCGGCTTATCCTACT 8777 Query 161149 TCTGATGT 161156 |||||||| Sbjct 8778 TCTGATGT 8785 >seq1269 Length=73620 Score = 136 bits (150), Expect = 4e-27 Identities = 314/443 (71%), Gaps = 39/443 (9%) Strand=Plus/Minus Query 160390 TGCTATGCATGGATC-TCTGGTTACTTCTAGTCTCG-TCAGAGAGACGACAGAAACTGAG 160447 |||||||||||| || | |||| ||||||||| | |||| || || ||||||| ||| Sbjct 6656 TGCTATGCATGGTTCCTTTGGTAACTTCTAGTTTGTATCAGGGAAACCACAGAAAATGAA 6597 Query 160448 TCCCAGAACT-ATGGTTA---CAAGTTCGGTC-AAGAGGAAGAGA-CTTACAACATC-GT 160500 || || | ||||| || ||||||| |||| ||||||| |||||||||| || Sbjct 6596 TCTGCTAATGCAAGGTTAGGCCAGATTCGGTCCAAGAAGAAGAGAACTTACAACATTTGT 6537 Query 160501 C--GCAGCACATGGCTACTTC-GGTCGTTTGA--TCTTCCAATATGCA---TCCTTTAAC 160552 || || ||||| || || || || |||| ||||||||||||| | | | ||| Sbjct 6536 TAGGCTGCTCATGGTTATTTTTGGCCGATTGACATCTTCCAATATGCTAGTTTCATCAAC 6477 Query 160553 AACTCA-CGCTCTCTGCACTTCTTC-CTCG-CTGCTTGGCCTGTTGTT--GGAATCTG-G 160606 ||||| || ||| | || |||||| || | | |||||||| | | | || || || | Sbjct 6476 AACTCCTCGTTCTTTACATTTCTTCTCTAGGCGGCTTGGCCCGGTAGTAGGGTATTTGTG 6417 Query 160607 TTCACTGCCCTT-GGTGTTTCTACC-ATGGCATTCAATCTCAATGGTTTCAACTTCAACC 160664 || ||| | || ||| | | || | ||||| ||||| || ||||||||||| ||||||| Sbjct 6416 TTTACTTGCTTTAGGTTTATGTAGCTATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 6357 Query 160665 -----AGTCCATCTTGGACA-ACCAAGGACAAGTT--CTGAACACTTGGGCAGACGTGCT 160716 | || | | | | | ||||||| ||| |||| |||||||| || | | Sbjct 6356 CCCCAAATCAGTGTAGTTGATAGCAAGGACGTGTTAATTGAATACTTGGGCTGATATTAT 6297 Query 160717 TAACCGCGCTGGTC-TGGGCATGGAAGTCAT-GCACGAGCGTA-ACGCTC--AC-AACTT 160770 |||||| | | | |||| |||||||| || ||| || |||| |||||| || ||||| Sbjct 6296 TAACCGTGGTAACCTTGGGTATGGAAGTTATGGCATGAACGTACACGCTCCAACGAACTT 6237 Query 160771 CCCTCTCGACCTTGCTGCTGCTG 160793 ||| || ||||| ||||||| || Sbjct 6236 CCCACTAGACCTAGCTGCTGTTG 6214 >seq1129 Length=53819 Score = 82.4 bits (90), Expect = 8e-11 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 || || ||||| || | || || ||||| || ||||| ||||| ||| ||||| || Sbjct 9097 GACGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGAGTTACCTTACTCTTGC 9038 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | |||||||| || || ||||| ||||||||||||| | || | || || || || Sbjct 9037 AGAGCTGGTGCGTGTTCCACTTGCGCTGGTAAGATTGTTACGGGCAACGTTGACCAGTCG 8978 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCA-GGATTTGTCCTGACCTGCGTTGC 161138 ||| || || || || ||| | | ||||| | | || | |||| |||| || || || Sbjct 8977 GATGGTTCGTTTCTCGACGAT-AGCCACTTGGAGAATGGTTATGTCTTGACTTGTGTGGC 8919 Query 161139 TTATCCCAC 161147 ||| ||||| Sbjct 8918 TTA-CCCAC 8911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551322171918000