Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq1269 125 9e-24 seq504 107 2e-18 >seq1269 Length=73620 Score = 125 bits (138), Expect = 9e-24 Identities = 251/347 (72%), Gaps = 34/347 (10%) Strand=Plus/Minus Query 189523 CAAGAAGAAGA-AACGTACAACATC-GTT--GCTGCTCATGGATATTTCGGTCGTCTT-- 189576 ||||||||||| ||| |||||||| ||| ||||||||||| ||||| | | || Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505 Query 189577 -ATCTTCCAATATGCATCGT----TCAACAACTCC-CGTTCACTTCACTTCTTC-CT-CG 189628 |||||||||||||| | || ||||||||||| ||||| | || |||||| || | Sbjct 6504 CATCTTCCAATATGC-TAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGG 6446 Query 189629 CTGCCTGG-CCAGTCGT-GGGTATCTG-GTTTAC-CGCCCTCGGCGTCAGCA-CCATGGC 189683 | || ||| || || || |||||| || |||||| || | || | | | | ||||| Sbjct 6445 CGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGC 6386 Query 189684 ATTCAACCTCAATGGGTTCAACTTCAA----TCAATCCATTCTTGATGGT--CAAGGTCG 189737 |||||||| ||||| ||||| ||||| ||| || | | | || | ||||| || Sbjct 6385 TTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCAAGGACG 6326 Query 189738 TGTT--CTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTT-GGTATGGAAGTCAT 189794 |||| |||| || ||||| || || | ||||||| | ||| ||||||||||| || Sbjct 6325 TGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTAT 6266 Query 189795 -GCATGAGCGTA-ACGCTC--AC-AACTTCCCTCTTGATCTGGCAGC 189836 |||||| |||| |||||| || |||||||| || || || || || Sbjct 6265 GGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGC 6219 >seq504 Length=87311 Score = 107 bits (118), Expect = 2e-18 Identities = 266/381 (70%), Gaps = 37/381 (10%) Strand=Plus/Minus Query 190266 GGGGGACTCTGGGCTTT-TGTGGC-GCTCCACGGGGCTTTCGCTCTAATTGGA--TTCAT 190321 || || || |||||||| | |||| |||| |||| ||||||| |||| || ||||| Sbjct 51430 GGTGGTCTGTGGGCTTTGTCTGGCTGCTC-ACGGCCCTTTCGCATTAATAGGTGTTTCAT 51372 Query 190322 GCT-TCG--TCAGTTT-GAACTGGCACGTCT-CATCGGTATCCGTCCTTAC-AATGCTAT 190375 | | ||| ||| ||| ||||| || | ||| | || | || ||||| ||||| || Sbjct 51371 GTTATCGGTTCAATTTTGAACTTGCTCATCTGCCTCAAT-TCGCACCTTATTAATGCAAT 51313 Query 190376 TGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTC---TCATCTACCCTC--TG 190430 || ||||||||||| || |||| ||||||| ||||| | | || || || | | Sbjct 51312 CGCATTCTCTGGTCCAATTGCTG-TTTTGTTTCTGTCTTCCGAGTAATTTATCCACGTTA 51254 Query 190431 GGTCAATCGAGTTGGTTCTTCGCGCC-ATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCT 190489 |||||||| || |||||| ||||| || || | | || || || ||| | Sbjct 51253 GGTCAATCTGGT--GTTCTTTGCGCCTATTTTT---------ACCTATATTTCGATTCAT 51205 Query 190490 CCTCTTCTTGC--AGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGG-TGT 190546 ||| || || | ||| || ||||| ||||| ||||||| || || |||||||| || Sbjct 51204 CCTTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAAGT 51145 Query 190547 TGCAGGTATCCTG--GGAGGAGCACTACTGT-CAGCAATCCATGGTGTGACT-GTAGAGA 190602 || ||| | ||| || | || || || | | || || ||||||| ||| ||||| | Sbjct 51144 CGCCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTGGTAGAAA 51085 Query 190603 ATACTTTGTATGAAGATGGTG 190623 ||||||| | ||||||||||| Sbjct 51084 ATACTTTATTTGAAGATGGTG 51064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634018097940000