Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq1269 125 8e-24 seq504 118 1e-21 >seq1269 Length=73620 Score = 125 bits (138), Expect = 8e-24 Identities = 311/442 (70%), Gaps = 39/442 (9%) Strand=Plus/Minus Query 161160 GCAATGCATGGTTCACT-GGTTACTTCTTCCCTGGTTC-GTGAAACCACTGAGAACGAGT 161217 || ||||||||||| | ||| |||||| || || | |||||||| || || || | Sbjct 6655 GCTATGCATGGTTCCTTTGGTAACTTCTAGTTTGTATCAGGGAAACCACAGAAAATGAAT 6596 Query 161218 CCCAGAACT-ATGGTTA---CAAGTTTGGTC-AAGAAGAAGAGACCT-ACAACATC-GTC 161270 | || | ||||| || || |||| |||||||||||| || ||||||| || Sbjct 6595 CTGCTAATGCAAGGTTAGGCCAGATTCGGTCCAAGAAGAAGAGAACTTACAACATTTGTT 6536 Query 161271 --GCTGCTCATGGTTACTTC-GGTCGCCTGA--TCTTCCAATACGC---TTCCTTCAACA 161322 |||||||||||||| || || || ||| |||||||||| || || | |||||| Sbjct 6535 AGGCTGCTCATGGTTATTTTTGGCCGATTGACATCTTCCAATATGCTAGTTTCATCAACA 6476 Query 161323 ACTCC-CGTTCGTTGCACTTCTTC-CT-CGCAGCATGG-CCTGTTGT-CGGTATCTG-GT 161376 ||||| ||||| || || |||||| || || || ||| || || || ||||| || || Sbjct 6475 ACTCCTCGTTCTTTACATTTCTTCTCTAGGCGGCTTGGCCCGGTAGTAGGGTATTTGTGT 6416 Query 161377 TCAC-TGCACTTGGTGTCTCCA-CCATGGCATTCAACCTGAACGGATTCAACTTCAACCA 161434 | || ||| | ||| | | | | ||||| |||||||| || || ||||| ||||||| Sbjct 6415 TTACTTGCTTTAGGTTTATGTAGCTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCC 6356 Query 161435 GTC-CATCATGGATGGTCAGGGCAAAGTC-------CTGAACACCTGGGCTGACGTTCTG 161486 | |||| | | | | |||| | | |||| || |||||||| || | Sbjct 6355 CCCAAATCAGTGTAGTTGATAGCAAGGACGTGTTAATTGAATACTTGGGCTGATATTATT 6296 Query 161487 AATCGTGCTAACCTT-GGTATGGAAGTAAT-GCACGAGCGTA-ATGCTC--AC-AACTTC 161540 || |||| ||||||| ||||||||||| || ||| || |||| | |||| || |||||| Sbjct 6295 AACCGTGGTAACCTTGGGTATGGAAGTTATGGCATGAACGTACACGCTCCAACGAACTTC 6236 Query 161541 CCTCTGGATCTCGCTGCTGCTG 161562 || || || || ||||||| || Sbjct 6235 CCACTAGACCTAGCTGCTGTTG 6214 >seq504 Length=87311 Score = 118 bits (130), Expect = 1e-21 Identities = 359/529 (68%), Gaps = 53/529 (10%) Strand=Plus/Minus Query 164166 GGGGGACTCTGGGCTTT-TGTGGCGTTCCACGGATCTTTCGCTCTGATCGGT--TTCATG 164222 || || || |||||||| | |||| ||||| ||||||| | || ||| |||||| Sbjct 51430 GGTGGTCTGTGGGCTTTGTCTGGCTGCTCACGGCCCTTTCGCATTAATAGGTGTTTCATG 51371 Query 164223 CT-TCGGC---AGTTTGAAATTGCACGTCTTGTAGGTATCCGT-CCGTAC-AATGCTATT 164276 | |||| | |||||| |||| | ||| | || || || || ||||| || Sbjct 51370 TTATCGGTTCAATTTTGAACTTGCTCATCT-GCCTCAATTCGCACCTTATTAATGCAATC 51312 Query 164277 GCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCC---TTATGTACCCTC--TCG 164331 || ||||||||||| |||||||| ||||| || |||| | || || || | | | Sbjct 51311 GCATTCTCTGGTCCAATTGCTGT-TTTGTTTCTGTCTTCCGAGTAATTTATCCACGTTAG 51253 Query 164332 GGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTC- 164390 | |||||| || ||||||||| || ||| | || || ||||| || Sbjct 51252 GTCAATCTGGT--GTTCTTTGCGCCTATTTTTAC--------CTATATTTCGATTCATCC 51203 Query 164391 TTGTTCCTCCAAGGT-TTCCATAACTGGACACTCAACCCCTTCCATATGATGGGT-GTTG 164448 || || ||||||| || ||||| |||||| | ||||| || ||||||||||| || | Sbjct 51202 TTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAAGTCG 51143 Query 164449 CAGGCATCCTTG--GTGGTGCTCTTCTCTGTG-CTATTCATGGTGCTACCG-TAGAGAAT 164504 | || | || | | | ||||| || || | |||||||||||||||| | |||| ||| Sbjct 51142 CCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTGGTAGAAAAT 51083 Query 164505 ACTTTGTTTGAAGATGGTGAACAAT---------CAAATAC-TTTCAAGGCATTCGAGCC 164554 ||||| ||||||||||||| || | |||| || | || || | || Sbjct 51082 ACTTTATTTGAAGATGGTGGGGGATTTTGTGGCAGAGATACATTCCGCTGCTTTTAACCC 51023 Query 164555 TACTCAAGAGGAAGAGACTTA-CTCGATGGTC-ACTGC--CAACCGCTTCTGGTCTCAGA 164610 ||||||| ||||| ||||| || |||||| || || || |||||| ||||| || | Sbjct 51022 AACTCAAGCCGAAGAAACTTATTTCAATGGTCAACCGCTACACCCGCTTTTGGTCACAAA 50963 Query 164611 --TTTTTGGTATTGCTTTCAGCAA--TAAGCGTTGGTTGCAC--TTCTT 164653 |||| || ||||||| ||| ||| |||||| | ||| ||||| Sbjct 50962 TCTTTTGGGGGTTGCTTTATCCAATTTAAACGTTGGCTTCACATTTCTT 50914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559273395604000