Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01000026.1 Length=199 Score E Sequences producing significant alignments: (Bits) Value seq36963 125 8e-27 seq4893 111 2e-22 seq2549 75.2 1e-11 >seq36963 Length=1246 Score = 125 bits (138), Expect = 8e-27 Identities = 148/198 (75%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| |||||| || || || Sbjct 1161 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGGGCAGACAAAC 1102 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 ||||| | ||||| | | |||| || | || |||| ||| || ||||| || Sbjct 1101 CTCGTTCTTTCAACTTAGCATATATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCC 1042 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTC 180 |||||| | |||||||| |||||| ||||||||| | | ||| | || |||||| Sbjct 1041 TCTCGGACTTGGACCTTAGCACCCAAGCCCTCACTGCTGTGACATTA--TAT-AGCATTC 985 Query 181 GGAGTTTGGCAGGACTTG 198 |||||||| ||||| ||| Sbjct 984 GGAGTTTGTCAGGAATTG 967 >seq4893 Length=910 Score = 111 bits (122), Expect = 2e-22 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| |||||| ||||| ||| Sbjct 183 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTAGGCAATCGGAC 124 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 ||||||| | ||||| | |||| || | || ||| ||| || ||||| || Sbjct 123 CTCGTTAGTTCAACTTAGTAGTAATTTGGGGACCTTAGCTGTTGGTCTGGGTTCTTTCCC 64 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTC 156 | | || | |||||||| |||||| | |||||||| Sbjct 63 TTTTGGCCTTGGACCTTAGCACCCAAGGCCTCACTC 28 >seq2549 Length=975 Score = 75.2 bits (82), Expect = 1e-11 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATG-AATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGA 59 ||| |||||| ||| ||| |||||||||| || ||| |||| |||||| | ||| | Sbjct 799 GCACTCTTTAAATGGAATAGCTGCTTCCAAGCTAAC-TCCTGGCTGTCT-AGCAACTGAA 742 Query 60 CTTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTC 119 | | |||| | ||||| | |||| || | || ||| ||| || ||||| | Sbjct 741 CCGCCTTAGTTCAACTTAGTGTAGATTTTGGGACCTTAGCTGCAGGTCTGGGTTCTTTCC 682 Query 120 CTCTCGGGCACGGACCTTACCACCCAT-GCCCTCACTCGCGCGGCATGACTGATGCGCAT 178 ||||||| ||||||||||| ||||| | ||||||| | || || || ||| | ||| Sbjct 681 CTCTCGGACACGGACCTTAGCACCCGTCGCCCTCA-TTGCAAGGTATATTTGACAC-CAT 624 Query 179 TCGGAGTT 186 |||||||| Sbjct 623 TCGGAGTT 616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537390398832