Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01000026.1
Length=199
Score E
Sequences producing significant alignments: (Bits) Value
seq36963 125 8e-27
seq4893 111 2e-22
seq2549 75.2 1e-11
>seq36963
Length=1246
Score = 125 bits (138), Expect = 8e-27
Identities = 148/198 (75%), Gaps = 3/198 (2%)
Strand=Plus/Minus
Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60
||| |||||| ||||||||||||||||| |||||||||||| |||||| || || ||
Sbjct 1161 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGGGCAGACAAAC 1102
Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120
||||| | ||||| | | |||| || | || |||| ||| || ||||| ||
Sbjct 1101 CTCGTTCTTTCAACTTAGCATATATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCC 1042
Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTC 180
|||||| | |||||||| |||||| ||||||||| | | ||| | || ||||||
Sbjct 1041 TCTCGGACTTGGACCTTAGCACCCAAGCCCTCACTGCTGTGACATTA--TAT-AGCATTC 985
Query 181 GGAGTTTGGCAGGACTTG 198
|||||||| ||||| |||
Sbjct 984 GGAGTTTGTCAGGAATTG 967
>seq4893
Length=910
Score = 111 bits (122), Expect = 2e-22
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60
||| |||||| ||||||||||||||||| |||||||||||| |||||| ||||| |||
Sbjct 183 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTAGGCAATCGGAC 124
Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120
||||||| | ||||| | |||| || | || ||| ||| || ||||| ||
Sbjct 123 CTCGTTAGTTCAACTTAGTAGTAATTTGGGGACCTTAGCTGTTGGTCTGGGTTCTTTCCC 64
Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTC 156
| | || | |||||||| |||||| | ||||||||
Sbjct 63 TTTTGGCCTTGGACCTTAGCACCCAAGGCCTCACTC 28
>seq2549
Length=975
Score = 75.2 bits (82), Expect = 1e-11
Identities = 134/188 (71%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 1 GCAGTCTTTAGATG-AATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGA 59
||| |||||| ||| ||| |||||||||| || ||| |||| |||||| | ||| |
Sbjct 799 GCACTCTTTAAATGGAATAGCTGCTTCCAAGCTAAC-TCCTGGCTGTCT-AGCAACTGAA 742
Query 60 CTTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTC 119
| | |||| | ||||| | |||| || | || ||| ||| || ||||| |
Sbjct 741 CCGCCTTAGTTCAACTTAGTGTAGATTTTGGGACCTTAGCTGCAGGTCTGGGTTCTTTCC 682
Query 120 CTCTCGGGCACGGACCTTACCACCCAT-GCCCTCACTCGCGCGGCATGACTGATGCGCAT 178
||||||| ||||||||||| ||||| | ||||||| | || || || ||| | |||
Sbjct 681 CTCTCGGACACGGACCTTAGCACCCGTCGCCCTCA-TTGCAAGGTATATTTGACAC-CAT 624
Query 179 TCGGAGTT 186
||||||||
Sbjct 623 TCGGAGTT 616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 537390398832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |