Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01000150.1
Length=138
Score E
Sequences producing significant alignments: (Bits) Value
seq17899 98.7 7e-19
seq16308 86.0 4e-15
seq29817 84.2 2e-14
seq15040 78.8 6e-13
seq34098 75.2 8e-12
>seq17899
Length=666
Score = 98.7 bits (108), Expect = 7e-19
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74
|||||||| ||||||||| |||||||||||||||| ||| || ||||| ||| ||
Sbjct 126 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGATCCCACCGTGGTCAGCTGCC 185
Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134
||| ||||| || |||| || |||| ||||||||||||||||||||||||
Sbjct 186 TCCTTGCGGTTAGCGCACTGCCTTCGGGTGAAACCAACTCCCATGGTGTGACGGGCGGTG 245
Query 135 TGTA 138
||||
Sbjct 246 TGTA 249
>seq16308
Length=687
Score = 86.0 bits (94), Expect = 4e-15
Identities = 95/126 (75%), Gaps = 2/126 (2%)
Strand=Plus/Minus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74
|||||||| ||||||||| ||||||||||||||| | || ||| ||| | | ||
Sbjct 183 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTTACCAAGCACTCCTTGGGGACCTGCC 124
Query 75 TCCC--GAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132
|||| | ||||| | | |||||| ||| | ||||||||||||||||||||||
Sbjct 123 TCCCTTGCGGGTTAGCGCAGCCACTTCTGGAGCACTCGACTCCCATGGTGTGACGGGCGG 64
Query 133 TGTGTA 138
||||||
Sbjct 63 TGTGTA 58
>seq29817
Length=527
Score = 84.2 bits (92), Expect = 2e-14
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74
|||||||| ||||||||| |||||||||||||||| | | | ||||| || |
Sbjct 153 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGCTGCT 94
Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134
||| | ||||| ||| |||| | |||| ||||||||||||||||||||||||
Sbjct 93 TCCTTACGGTTAGCGCACCGGCTTCGGGTAGAACCAACTCCCATGGTGTGACGGGCGGTG 34
Query 135 TGTA 138
||||
Sbjct 33 TGTA 30
>seq15040
Length=696
Score = 78.8 bits (86), Expect = 6e-13
Identities = 91/123 (74%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 16 CCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCT 75
||||||| ||||||||| ||||||||||||| |||||| ||| | ||| || |||
Sbjct 530 CCTACGGCTACCTTGTTACGACTTCACCCCAATCATGAGTCATACCTTGGGCCGCTGCCT 471
Query 76 CCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGT 135
|| ||||| | |||||| | ||| ||||| | || |||||||||||||||
Sbjct 470 CCTTGCGGTTAGCACGCAGACTTCTAGTACAATCCACTTTCGTGATGTGACGGGCGGTGT 411
Query 136 GTA 138
|||
Sbjct 410 GTA 408
>seq34098
Length=1908
Score = 75.2 bits (82), Expect = 8e-12
Identities = 91/124 (73%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74
|||||||| ||||||||| ||||||| |||||||||| ||| | ||| || ||
Sbjct 181 CCCTACGGCTACCTTGTTACGACTTCGCCCCAGTCATTGATCCTACCGTGACCGGCTGCC 122
Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134
||| ||||| ||| ||| | |||| |||||||||| |||||||||||||
Sbjct 121 TCCTTGCGGTTAGCGCACCGTTTTCGGGTAGAACCAACTCCCATGGCGTGACGGGCGGTG 62
Query 135 TGTA 138
||||
Sbjct 61 TGTA 58
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 345469602960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |