Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01000150.1 Length=138 Score E Sequences producing significant alignments: (Bits) Value seq17899 98.7 7e-19 seq16308 86.0 4e-15 seq29817 84.2 2e-14 seq15040 78.8 6e-13 seq34098 75.2 8e-12 >seq17899 Length=666 Score = 98.7 bits (108), Expect = 7e-19 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| |||||||||||||||| ||| || ||||| ||| || Sbjct 126 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGATCCCACCGTGGTCAGCTGCC 185 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 ||| ||||| || |||| || |||| |||||||||||||||||||||||| Sbjct 186 TCCTTGCGGTTAGCGCACTGCCTTCGGGTGAAACCAACTCCCATGGTGTGACGGGCGGTG 245 Query 135 TGTA 138 |||| Sbjct 246 TGTA 249 >seq16308 Length=687 Score = 86.0 bits (94), Expect = 4e-15 Identities = 95/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| ||||||||||||||| | || ||| ||| | | || Sbjct 183 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTTACCAAGCACTCCTTGGGGACCTGCC 124 Query 75 TCCC--GAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132 |||| | ||||| | | |||||| ||| | |||||||||||||||||||||| Sbjct 123 TCCCTTGCGGGTTAGCGCAGCCACTTCTGGAGCACTCGACTCCCATGGTGTGACGGGCGG 64 Query 133 TGTGTA 138 |||||| Sbjct 63 TGTGTA 58 >seq29817 Length=527 Score = 84.2 bits (92), Expect = 2e-14 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| |||||||||||||||| | | | ||||| || | Sbjct 153 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGCTGCT 94 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 ||| | ||||| ||| |||| | |||| |||||||||||||||||||||||| Sbjct 93 TCCTTACGGTTAGCGCACCGGCTTCGGGTAGAACCAACTCCCATGGTGTGACGGGCGGTG 34 Query 135 TGTA 138 |||| Sbjct 33 TGTA 30 >seq15040 Length=696 Score = 78.8 bits (86), Expect = 6e-13 Identities = 91/123 (74%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 16 CCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCT 75 ||||||| ||||||||| ||||||||||||| |||||| ||| | ||| || ||| Sbjct 530 CCTACGGCTACCTTGTTACGACTTCACCCCAATCATGAGTCATACCTTGGGCCGCTGCCT 471 Query 76 CCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGT 135 || ||||| | |||||| | ||| ||||| | || ||||||||||||||| Sbjct 470 CCTTGCGGTTAGCACGCAGACTTCTAGTACAATCCACTTTCGTGATGTGACGGGCGGTGT 411 Query 136 GTA 138 ||| Sbjct 410 GTA 408 >seq34098 Length=1908 Score = 75.2 bits (82), Expect = 8e-12 Identities = 91/124 (73%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| ||||||| |||||||||| ||| | ||| || || Sbjct 181 CCCTACGGCTACCTTGTTACGACTTCGCCCCAGTCATTGATCCTACCGTGACCGGCTGCC 122 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 ||| ||||| ||| ||| | |||| |||||||||| ||||||||||||| Sbjct 121 TCCTTGCGGTTAGCGCACCGTTTTCGGGTAGAACCAACTCCCATGGCGTGACGGGCGGTG 62 Query 135 TGTA 138 |||| Sbjct 61 TGTA 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345469602960