Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq103 410 2e-112 seq22 390 2e-106 seq147 370 2e-100 seq57 370 2e-100 seq344 313 4e-83 seq96 306 6e-81 seq1 257 3e-66 seq43 248 1e-63 seq1036 210 3e-52 seq808 192 9e-47 >seq103 Length=1049538 Score = 410 bits (454), Expect = 2e-112 Identities = 247/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 762419 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 762362 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 762361 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAGTTTCAAAGATTA 762302 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 762301 CCCGGACCTGTCGGTCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 762242 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 762241 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 762182 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 762181 GCCATAGTCCCTCTAA 762166 >seq22 Length=40393389 Score = 390 bits (432), Expect = 2e-106 Identities = 244/257 (95%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 33416104 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 33416161 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 33416162 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 33416221 Query 121 CCCGGA-CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||| ||||| ||||||||||||||||||| ||||||||| ||||||| Sbjct 33416222 CCCGGAACCTGTCGGTCAAGGCTATAGACTCGTTGAATACATTAGTGTAGCGTGCGTGCG 33416281 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 33416282 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACGTTCGTGGCCTAAAA 33416341 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 33416342 GGCCATAGTCCCTCTAA 33416358 >seq147 Length=783512 Score = 370 bits (410), Expect = 2e-100 Identities = 238/256 (93%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | Sbjct 699878 GTATAAAGGGCAGGGACGTAGTCAACGTGAGCT-GATGACTCGCGCTTACTAGGAATT-C 699821 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || ||||||||||||||||||||||||||| |||||||||||| || |||||||||||| Sbjct 699820 CTTATTGAAGACCAACAATTGCAATGATCTAACCCCATCACGATTAAGTTTCAAAGATTA 699761 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | |||||| |||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 699760 CTCGGACCGATCGGTCAAGGTTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 699701 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 699700 CCCAGAACATCTAAGGGCATAACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 699641 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 699640 GCCATAGTCCCTCTAA 699625 >seq57 Length=33024243 Score = 370 bits (410), Expect = 2e-100 Identities = 238/256 (93%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | Sbjct 27222519 GTATAAAGGGCAGGGACGTAGTCAACGTGAGCT-GATGACTCGCGCTTACTAGGAATT-C 27222462 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || ||||||||||||||||||||||||||| |||||||||||| || |||||||||||| Sbjct 27222461 CTTATTGAAGACCAACAATTGCAATGATCTAACCCCATCACGATTAAGTTTCAAAGATTA 27222402 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | |||||| |||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 27222401 CTCGGACCGATCGGTCAAGGTTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 27222342 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 27222341 CCCAGAACATCTAAGGGCATAACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 27222282 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 27222281 GCCATAGTCCCTCTAA 27222266 >seq344 Length=88605 Score = 313 bits (346), Expect = 4e-83 Identities = 218/245 (89%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||||||||||| | ||||| |||||||||||||||||||||||| | Sbjct 76588 GTACAAAGGGTAGGGACGTAGTCAATGTGAGCT-GATGACTCGCGCTTACTAGGAATT-C 76645 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 76646 CTCGTTGAAGACAAACAATTGAAATGATTTATCCCCATCACGATGAAATTTCAAAGATTA 76705 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || | ||| ||||| ||||| ||||||||||| |||||||| |||||| | || |||| Sbjct 76706 CCGGAACCCGTCGGTCAAGGCTATAGACTCGTTAAATACATCCGTGTAGTGTGCAAGCGG 76765 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||| | |||||||||||||||||| || ||||||||||||||| ||||||| |||| ||| Sbjct 76766 CCCTGGACATCTAAGGGCATCACAAACTTGTTATTGCCTCAAAATTCCGTGACCTAGAAG 76825 Query 241 GCCAT 245 ||||| Sbjct 76826 GCCAT 76830 >seq96 Length=52461754 Score = 306 bits (338), Expect = 6e-81 Identities = 185/193 (96%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 8 GGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTG 67 |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 45403668 GGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-CCTCGTTG 45403725 Query 68 AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGAC 127 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 45403726 AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAGTTTCAAAGATTACCCGGAC 45403785 Query 128 CTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAA 187 || |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45403786 CTATCGGTCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAA 45403845 Query 188 CATCTAAGGGCAT 200 |||||||||| || Sbjct 45403846 CATCTAAGGGGAT 45403858 Score = 127 bits (140), Expect = 3e-27 Identities = 85/92 (92%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||| | Sbjct 39586647 GTACAAAGGACAAGGACGTAGTCAACGGGAGCTA-ATGACTCGCGCTTACTAGGAATT-C 39586704 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTAT 92 |||||||||||| ||||||||||||||||||| Sbjct 39586705 CTCGTTGAAGACTAACAATTGCAATGATCTAT 39586736 >seq1 Length=34941034 Score = 257 bits (284), Expect = 3e-66 Identities = 216/260 (83%), Gaps = 9/260 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| ||| ||||||| |||| | |||| ||||| ||| ||||||||| | Sbjct 5531566 GTACAAAGGGCAGAGAC--AGTCAACACGAGAT-GATGGCTCGCACTTTCTAGGAATT-C 5531511 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || || Sbjct 5531510 CTCGTTGAAGACCAACAATTGTAATGATCTATCCCTATCACGATGAAATTTCAATGAGTA 5531451 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG- 179 |||| ||| ||| ||| || || |||| ||||||||||||||||||| || |||||| Sbjct 5531450 CCCGTGCCTATCGATCAATGTTATGGACTTGTTGAATACATCAGTGTAGAGCTCGTGCGG 5531391 Query 180 ---GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTA 236 ||| | | ||||||||| ||||| |||||| |||||||||||| |||| |||| Sbjct 5531390 CGCGCCTAAATGATCTAAGGGAATCACGGACCTGCACCTGCCTCAAACTTGCGTGACCTA 5531331 Query 237 AAAGGCCAT-CTCCCTCGAA 255 ||||||||| |||||| || Sbjct 5531330 AAAGGCCATAGTCCCTCTAA 5531311 >seq43 Length=26577699 Score = 248 bits (274), Expect = 1e-63 Identities = 211/256 (82%), Gaps = 12/256 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||| | || ||||| || | ||||||| | ||||| |||||||||| Sbjct 21125991 GTACAAAGGGCAGGTATGTT---AACGCAAGAT-GATGACTGGTGCTTATTAGGAATTTC 21126046 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 21126047 TTGGT-GAAGACCAACAATTGCAATGATTTATCCCCATCACGATGAAATTTCAAAGATTA 21126105 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||||||||| || ||||| ||| ||||||||||||||| | | |||| | | Sbjct 21126106 CCCGGACCTGTTGGTCAAGGCTATACACTCGTTGAATACATTATTATAGCTCCTG----- 21126160 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 | |||||| ||||||| || | | ||||||||||||||||||||| | |||||||| || Sbjct 21126161 -CTAGAACACCTAAGGGTATTATATACCTGTTATTGCCTCAAACTTTCATGGCCTAACAG 21126219 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 21126220 GCCATAGTCCCTCTAA 21126235 >seq1036 Length=7046 Score = 210 bits (232), Expect = 3e-52 Identities = 208/259 (80%), Gaps = 9/259 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 2429 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 2486 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||||| | | ||||| | || Sbjct 2487 CTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 2546 Query 120 ACCCGGACCTGTCGGCCAAGGTG-ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||| ||| ||| ||| | | |||| || ||| | | |||||||||||||||||| Sbjct 2547 ACCCGGTCCTTACGGATCAGGAGGAGAGACACGCTGATTCCTTCAGTGTAGCGCGCGTGC 2606 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAA 237 ||||| |||||||||||||||||||||||||||||||| ||||| || |||| | |||| Sbjct 2607 GGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGTGACTAA 2663 Query 238 AAGGC-CATCTCCCTCGAA 255 | | | | | |||||| || Sbjct 2664 ACGCCACTTGTCCCTCTAA 2682 >seq808 Length=9131 Score = 192 bits (212), Expect = 9e-47 Identities = 184/229 (80%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| || | || || |||||||| ||| ||||||||||| | Sbjct 6330 GTACAAAGGGCAGGGACGTAATCGATGC-AGGTTGATGACCTGCGTCTACTAGGAATT-C 6273 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 ||||||| | || | |||||| | | ||| | |||| | |||||||| |||| Sbjct 6272 CTCGTTGGTG-CCTCTAGTTGCAAGAGGCAAGCCCAAGCACGCTAGGATTTCAAAAGATT 6214 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | || | ||| ||| ||||| | | |||||||||| | || ||||||||||||||| Sbjct 6213 AACCAGGCCTCTCGACCAAG-TCCGATACTCGTTGAACCTAGCATTGTAGCGCGCGTGCG 6155 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6154 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751706807890