Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq57 131 9e-29 seq10515 125 4e-27 seq808 120 2e-25 seq22 120 2e-25 seq147 116 2e-24 seq103 116 2e-24 seq43 89.7 3e-16 seq1036 87.8 1e-15 >seq57 Length=33024243 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| | ||| || ||||||| || Sbjct 8400434 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGCGTCCTAAAAGTAACATCCGCC 8400375 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 8400374 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 8400318 Score = 116 bits (128), Expect = 2e-24 Identities = 98/118 (83%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| ||| | ||| || ||||||| | Sbjct 27221990 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGCGTCCTAAAAGTAACATCCGC 27221932 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| |||| ||| ||||| |||| |||||| || |||||||||| |||||||| Sbjct 27221931 CGATCCCTGGTCGACATCGTTTATGGTTGAGACTAGGATGGTATCTGATTGTCTTCGA 27221874 >seq10515 Length=788 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 646 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGTGGAGTCATCAAAAGAACATCCACC 587 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 586 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGA 530 >seq808 Length=9131 Score = 120 bits (132), Expect = 2e-25 Identities = 97/115 (84%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 5 CCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAA-ATGATAA-CATCGCCCGA 62 ||||| |||||||||||||| ||||||| || ||||| | |||| || | | || | Sbjct 5792 CCAAACACTTTGATTTCTCGGAAGGTGCTGACGGAGTCTTATATGAAAAACGACCGCCAA 5733 Query 63 TCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 5732 TCCCTAGTCGACATAGTTTATGGTTGAGACTACGACGGTATCTGATCGTCTTCGA 5678 >seq22 Length=40393389 Score = 120 bits (132), Expect = 2e-25 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||| | ||| | ||| || ||||||| | Sbjct 33416635 GAACCCAAAAACTTTGATTTCTCATAAGGTG-CTAGCAGCGTCCTAAAAGTAACATCCGC 33416693 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| ||| |||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 33416694 CGATCCCTGGTCAGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 33416751 >seq147 Length=783512 Score = 116 bits (128), Expect = 2e-24 Identities = 98/118 (83%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| ||| | ||| || ||||||| | Sbjct 699349 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGCGTCCTAAAAGTAACATCCGC 699291 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| |||| ||| ||||| |||| |||||| || |||||||||| |||||||| Sbjct 699290 CGATCCCTGGTCGACATCGTTTATGGTTGAGACTAGGATGGTATCTGATTGTCTTCGA 699233 >seq103 Length=1049538 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| ||||||| || | ||| || ||||||| || Sbjct 761889 GAACCCAAAAACTTTGATTTCTCATAAGGTGTCGGTGGTGTCTTAAAAGTAACATCCGCC 761830 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| ||| |||| ||||| |||| |||||| || ||||||||||||||||||| Sbjct 761829 GATCCCTGGTCAGCATCGTTTATGGTTGAGACTAGGATGGTATCTGATCGTCTTCGA 761773 >seq43 Length=26577699 Score = 89.7 bits (98), Expect = 3e-16 Identities = 90/115 (78%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTC--AAAATGATAACATCGCC 59 |||||||| ||||||||||||| ||||||| || | ||| |||| | |||||| Sbjct 21126473 AACCCAAAAACTTTGATTTCTCATAAGGTGTCGGCGGCGTCCTAAAAAG-TAACATATGT 21126531 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114 ||||||||||| ||||| |||| |||| |||||| | | ||||| |||||| || Sbjct 21126532 CGATCCCTAGTTGGCATCATTTATGGTTGAGACTAGGGCAGTATCGGATCGTTTT 21126586 >seq1036 Length=7046 Score = 87.8 bits (96), Expect = 1e-15 Identities = 94/119 (79%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT-AAC-ATCGC 58 ||| ||||| |||||| |||| || | | |||| ||||| | |||| ||| ||||| Sbjct 2961 GAATCCAAAAACTTTGGTTTCCCGAAGGCTGCCC-GCGAGGTCATATGAACAACGATCGC 3019 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||| ||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 3020 G-GATCGCTAGTCGACATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 3077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278294957940