Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq23215 379 4e-103
seq10515 269 5e-70
seq103 232 1e-58
seq23984 226 5e-57
seq57 226 5e-57
seq344 219 8e-55
seq147 219 8e-55
seq808 206 5e-51
seq22 192 1e-46
seq43 116 7e-24
seq1036 96.9 6e-18
seq2603 78.8 2e-12
>seq23215
Length=601
Score = 379 bits (420), Expect = 4e-103
Identities = 263/297 (89%), Gaps = 1/297 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTT-CCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGG 63
|||| |||||||||||| ||||||| ||| |||||| ||||||||||| ||| |||||
Sbjct 303 TGGTTCGGCCGGGCCTTCACCTTCTGCGGAACCGCATCTCCTTCACTGGGGGTGTCGGGG 244
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACA 123
| |||||| |||||| |||||||||||||||| || | |||||||| |||||||||| |
Sbjct 243 AAACAGGACGTTTACTGTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATAGA 184
Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183
||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 183 TTAGCATGGAATAATGGAATAGGACGTGTGGTCTTATTTCGTTGGTTTCTAGGACCGCCG 124
Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243
|||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||
Sbjct 123 TAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTCTTG 64
Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300
||| ||||||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 63 GATCGATTGAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA 7
>seq10515
Length=788
Score = 269 bits (298), Expect = 5e-70
Identities = 209/245 (85%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133
||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 287 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATACATTAGCATGGA 346
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
|||| | ||||||| | | |||| |||||||| | |||||||| |||||||||||
Sbjct 347 ATAACACGATAGGACT--CTGGCCTATCTTGTTGGTCTGTAGGACCGGAGTAATGATTAA 404
Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253
||||| ||||||||| | ||||| ||||||||||||||||||||||||||||| |
Sbjct 405 GAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTATGAA 464
Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
|||| ||||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 465 AGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 523
Query 314 AGGGG 318
||||
Sbjct 524 GGGGG 528
>seq103
Length=1049538
Score = 232 bits (256), Expect = 1e-58
Identities = 203/249 (82%), Gaps = 3/249 (1%)
Strand=Plus/Plus
Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129
||| |||||||||| ||||||||||| |||||||| |||| ||||| | |||||||||||
Sbjct 761525 ACTGTTACTTTGAAGAAATTAGAGTGATCAAAGCAAGCCTATGCTCTGTATACATTAGCA 761584
Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189
|||||||| | | |||| | |||| ||||| | |||| | |||| || |||||||
Sbjct 761585 TGGAATAACATCAGAGGAT-TCCGGTCCTATTATATTGGCCTTAAGGATCGAAGTAATGA 761643
Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249
|||| | ||| ||||||| | | ||||| || |||||||||||||||||||||||||
Sbjct 761644 TTAACAAGGACAGTCGGGAGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 761703
Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309
| ||||| ||| ||||||||||| || |||||||||||| ||||||||| |||||||
Sbjct 761704 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTCCATTAATCA-AGAACGAA 761762
Query 310 AGTTAGGGG 318
|||| ||||
Sbjct 761763 AGTTGGGGG 761771
>seq23984
Length=591
Score = 226 bits (250), Expect = 5e-57
Identities = 202/249 (81%), Gaps = 3/249 (1%)
Strand=Plus/Plus
Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129
||| |||||||||| |||| |||||| |||||||| |||| ||| | |||||||||||
Sbjct 332 ACTGTTACTTTGAAGAAATAAGAGTGCTCAAAGCAAGCCTACACTCTGTATACATTAGCA 391
Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189
||| |||| | |||||| | |||| ||||| |||||| | ||| || |||||||
Sbjct 392 TGGGATAACATCATAGGATTT-CGGTCCTATTATGTTGGCCTTCGGGATCGGAGTAATGA 450
Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249
|||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||
Sbjct 451 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 510
Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309
| ||||| ||| ||||| ||||| || |||||||||||||||||||||| |||||||
Sbjct 511 TGAAAGACGAACAACTGCAAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAA 569
Query 310 AGTTAGGGG 318
|||| ||||
Sbjct 570 AGTTGGGGG 578
>seq57
Length=33024243
Score = 226 bits (250), Expect = 5e-57
Identities = 202/249 (81%), Gaps = 3/249 (1%)
Strand=Plus/Plus
Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129
||| |||||||||| ||||||||||| |||||| | || |||| | |||||||||||
Sbjct 8400070 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGTGAGACTACGCTCTGTATACATTAGCA 8400129
Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189
||| |||| | |||||| | |||| ||||| |||||| | ||| || |||||||
Sbjct 8400130 TGGGATAACATCATAGGAT-TCCGGTCCTATTATGTTGGCCTTCGGGATCGGAGTAATGA 8400188
Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249
|||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||
Sbjct 8400189 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 8400248
Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309
| ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 8400249 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAA 8400307
Query 310 AGTTAGGGG 318
|||| ||||
Sbjct 8400308 AGTTGGGGG 8400316
Score = 219 bits (242), Expect = 8e-55
Identities = 198/245 (81%), Gaps = 3/245 (1%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133
|||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||||
Sbjct 27221630 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 27221689
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
|||| | |||||| | ||| ||||| |||| | | ||| || ||||| |||||
Sbjct 27221690 ATAACATCATAGGAT-TCAGGTCCTATTATGTTAGCCTTCGGGATCGGAGTAATAATTAA 27221748
Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253
||||| ||||||||| | ||||| || |||| ||||||||||||||||||||| |
Sbjct 27221749 CAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTATGAA 27221808
Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
|||| ||| ||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 27221809 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 27221867
Query 314 AGGGG 318
||||
Sbjct 27221868 GGGGG 27221872
Score = 159 bits (176), Expect = 6e-37
Identities = 146/182 (80%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129
||| |||||||||| |||||||||| |||||||| |||| |||| | |||||||||||
Sbjct 13340275 ACTGTTACTTTGAAGAAATTAGAGTACTCAAAGCAAGCCTACGCTCTGTATACATTAGCA 13340334
Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189
||| |||| | |||||| | |||| ||||| |||||| | ||| || |||||||
Sbjct 13340335 TGGGATAACATCATAGGAT-TCCGGTCCTATTATGTTGGCCTTCGGGATCGGAGTAATGA 13340393
Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249
|||| | ||| ||||||||| | ||||| || |||||||||||||||||||||||||
Sbjct 13340394 TTAACACGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 13340453
Query 250 TT 251
||
Sbjct 13340454 TT 13340455
>seq344
Length=88605
Score = 219 bits (242), Expect = 8e-55
Identities = 201/249 (81%), Gaps = 4/249 (2%)
Strand=Plus/Minus
Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCAT 130
||| |||||||||| ||||||||||| |||||||| |||| | | ||||||||||||
Sbjct 77455 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGTCTGTATACATTAGCAT 77396
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT-TTCTAGGACCGCCGTAATGA 189
|| |||| | |||||| | | || ||||| |||||| ||| || | || |||||||
Sbjct 77395 GGGATAACATCATAGGAT-TCCAGTCCTATTATGTTGGACTTCGAG-ATCGGAGTAATGA 77338
Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249
|||| ||||| |||||||||| | ||||| || ||||||||||||||||||||||||
Sbjct 77337 TTAACAGGGAAAGTCGGGGGTATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTG 77278
Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309
| |||| ||| | || |||||| || ||||||||||||||||||||||| |||||||
Sbjct 77277 TGAAAGATGAACAATTGTGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAA 77219
Query 310 AGTTAGGGG 318
|||| ||||
Sbjct 77218 AGTTGGGGG 77210
>seq147
Length=783512
Score = 219 bits (242), Expect = 8e-55
Identities = 198/245 (81%), Gaps = 3/245 (1%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133
|||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||||
Sbjct 698989 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 699048
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
|||| | |||||| | ||| ||||| |||| | | ||| || ||||| |||||
Sbjct 699049 ATAACATCATAGGAT-TCAGGTCCTATTATGTTAGCCTTCGGGATCGGAGTAATAATTAA 699107
Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253
||||| ||||||||| | ||||| || |||| ||||||||||||||||||||| |
Sbjct 699108 CAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTATGAA 699167
Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
|||| ||| ||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 699168 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 699226
Query 314 AGGGG 318
||||
Sbjct 699227 GGGGG 699231
>seq808
Length=9131
Score = 206 bits (228), Expect = 5e-51
Identities = 200/252 (79%), Gaps = 9/252 (4%)
Strand=Plus/Plus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTC--GAATACATTAGC 128
|||||| ||| |||||| |||||||||| |||||| | |||| ||| | |||||
Sbjct 5427 TTTACTGTGAGAAAATTGGAGTGTTCAAGGCAGGCGTGGATTGCAACTGAACATGTTAGC 5486
Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC--GCCGTAA 186
||||||||||| ||||| | | ||| || ||||||||||||||||| | | ||||
Sbjct 5487 ATGGAATAATAAGATAGGGC-TCCGGCTCCATTTTGTTGGTTTCTAGAGCGTGGGAGTAA 5545
Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246
||||| ||||||| ||| ||||||| |||||||| | |||||||||||||| |||||
Sbjct 5546 TGATTGATAGGGACAGTTGGGGGTGCTAGTATTCAGCGGCCAGAGGTGAAATTCATGGAT 5605
Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306
| |||||||| ||| ||||||||| |||||||||||||| || ||||||| ||||
Sbjct 5606 TCGCTGAAGACTGACTTATGCGAAAGCATTCACCAAGGATGTCCTCTTTAATCA-AGAAC 5664
Query 307 GAAAGTTAGGGG 318
||||||| ||||
Sbjct 5665 GAAAGTTGGGGG 5676
>seq22
Length=40393389
Score = 192 bits (212), Expect = 1e-46
Identities = 198/254 (78%), Gaps = 4/254 (2%)
Strand=Plus/Minus
Query 67 CAGG-ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACAT 124
|||| ||| |||||||||| ||||||||||| ||||||| |||| |||| | ||||||
Sbjct 33417004 CAGGCACTGTTACTTTGAAGAAATTAGAGTGCCCAAAGCAAGCCTACGCTCTATATACAT 33416945
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
|||||||| ||| | |||||| |||| ||||| |||||| | ||| || ||
Sbjct 33416944 TAGCATGGGATAGCATCATAGGATAC-CGGTCCTATTATGTTGGCCTTCGGGATCGGAGT 33416886
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||| | ||||| || ||||| | ||||| || || | |||||||||||||||
Sbjct 33416885 AATGATTGACAGGGACAGCTGGGGGCATTCGTATTTCATAGTTATAGGTGAAATTCTTGG 33416826
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
|||||| ||||| ||| ||||||||||| || |||||||||||| |||||| | ||
Sbjct 33416825 ATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTAAATTAATGA-AGA 33416767
Query 305 ACGAAAGTTAGGGG 318
||||||||| ||||
Sbjct 33416766 ACGAAAGTTGGGGG 33416753
>seq43
Length=26577699
Score = 116 bits (128), Expect = 7e-24
Identities = 165/224 (74%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACG 149
|||||| |||||||| |||| || | ||| |||||||||| ||| | ||||||
Sbjct 21126814 AGAGTGCTCAAAGCAAGCCTACACTATGTATAGATTAGCATGGG-TAACATCATAGGATT 21126756
Query 150 TGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGG 209
| ||| ||||| ||||| | | ||| || ||||||||||| ||||| ||| |||
Sbjct 21126755 TT-GGTCCTATTATGTTGTCCT-TCGGATCGAAGTAATGATTAACAGGGACAGTGTGGGA 21126698
Query 210 TGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269
| ||| | || || | | ||||||||||||||||||| ||||| | || | ||
Sbjct 21126697 CATTTGTACTTCATAGTTACACGTGAAATTCTTGGATTTATGAAAGACGTATAACCGTGA 21126638
Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
|||| || ||||||||| |||||||||||| ||| |||||||
Sbjct 21126637 AAGCATTTGCCAAGGATG-TTTCATTAATCA-AGAATGAAAGTT 21126596
>seq1036
Length=7046
Score = 96.9 bits (106), Expect = 6e-18
Identities = 93/118 (79%), Gaps = 1/118 (1%)
Strand=Plus/Minus
Query 201 AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260
|| |||||| | ||||| ||| ||||||||||||||||||| ||||| ||
Sbjct 3195 AGACGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAA 3136
Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||||||||||||| || ||||| |||||||||||||||| |||||||||| || ||
Sbjct 3135 CTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTCAGAGG 3079
>seq2603
Length=970
Score = 78.8 bits (86), Expect = 2e-12
Identities = 81/103 (79%), Gaps = 6/103 (6%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTC--GAATACATTAGC 128
|||||| ||| |||||| |||||||||| |||||| | |||| ||| | |||||
Sbjct 283 TTTACTGTGAGAAAATTGGAGTGTTCAAGGCAGGCGTGGATTGCAACTGAACATGTTAGC 224
Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT 171
||||||||||| ||||| | | ||| || |||||||||||||
Sbjct 223 ATGGAATAATAAGATAGGGC-TCCGGCTCCATTTTGTTGGTTT 182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914831668608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |