Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq23215 379 4e-103 seq10515 269 5e-70 seq103 232 1e-58 seq23984 226 5e-57 seq57 226 5e-57 seq344 219 8e-55 seq147 219 8e-55 seq808 206 5e-51 seq22 192 1e-46 seq43 116 7e-24 seq1036 96.9 6e-18 seq2603 78.8 2e-12 >seq23215 Length=601 Score = 379 bits (420), Expect = 4e-103 Identities = 263/297 (89%), Gaps = 1/297 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTT-CCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGG 63 |||| |||||||||||| ||||||| ||| |||||| ||||||||||| ||| ||||| Sbjct 303 TGGTTCGGCCGGGCCTTCACCTTCTGCGGAACCGCATCTCCTTCACTGGGGGTGTCGGGG 244 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACA 123 | |||||| |||||| |||||||||||||||| || | |||||||| |||||||||| | Sbjct 243 AAACAGGACGTTTACTGTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATAGA 184 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183 ||||||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 183 TTAGCATGGAATAATGGAATAGGACGTGTGGTCTTATTTCGTTGGTTTCTAGGACCGCCG 124 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| Sbjct 123 TAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTCTTG 64 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||| ||||||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 63 GATCGATTGAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA 7 >seq10515 Length=788 Score = 269 bits (298), Expect = 5e-70 Identities = 209/245 (85%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 287 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATACATTAGCATGGA 346 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | ||||||| | | |||| |||||||| | |||||||| ||||||||||| Sbjct 347 ATAACACGATAGGACT--CTGGCCTATCTTGTTGGTCTGTAGGACCGGAGTAATGATTAA 404 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| ||||||||||||||||||||||||||||| | Sbjct 405 GAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTATGAA 464 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||||||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 465 AGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 523 Query 314 AGGGG 318 |||| Sbjct 524 GGGGG 528 >seq103 Length=1049538 Score = 232 bits (256), Expect = 1e-58 Identities = 203/249 (82%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 ||| |||||||||| ||||||||||| |||||||| |||| ||||| | ||||||||||| Sbjct 761525 ACTGTTACTTTGAAGAAATTAGAGTGATCAAAGCAAGCCTATGCTCTGTATACATTAGCA 761584 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 |||||||| | | |||| | |||| ||||| | |||| | |||| || ||||||| Sbjct 761585 TGGAATAACATCAGAGGAT-TCCGGTCCTATTATATTGGCCTTAAGGATCGAAGTAATGA 761643 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| | ||| ||||||| | | ||||| || ||||||||||||||||||||||||| Sbjct 761644 TTAACAAGGACAGTCGGGAGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 761703 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||||||||||| || |||||||||||| ||||||||| ||||||| Sbjct 761704 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTCCATTAATCA-AGAACGAA 761762 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 761763 AGTTGGGGG 761771 >seq23984 Length=591 Score = 226 bits (250), Expect = 5e-57 Identities = 202/249 (81%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 ||| |||||||||| |||| |||||| |||||||| |||| ||| | ||||||||||| Sbjct 332 ACTGTTACTTTGAAGAAATAAGAGTGCTCAAAGCAAGCCTACACTCTGTATACATTAGCA 391 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||| |||| | |||||| | |||| ||||| |||||| | ||| || ||||||| Sbjct 392 TGGGATAACATCATAGGATTT-CGGTCCTATTATGTTGGCCTTCGGGATCGGAGTAATGA 450 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||| Sbjct 451 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 510 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||||| ||||| || |||||||||||||||||||||| ||||||| Sbjct 511 TGAAAGACGAACAACTGCAAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAA 569 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 570 AGTTGGGGG 578 >seq57 Length=33024243 Score = 226 bits (250), Expect = 5e-57 Identities = 202/249 (81%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 ||| |||||||||| ||||||||||| |||||| | || |||| | ||||||||||| Sbjct 8400070 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGTGAGACTACGCTCTGTATACATTAGCA 8400129 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||| |||| | |||||| | |||| ||||| |||||| | ||| || ||||||| Sbjct 8400130 TGGGATAACATCATAGGAT-TCCGGTCCTATTATGTTGGCCTTCGGGATCGGAGTAATGA 8400188 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||| Sbjct 8400189 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 8400248 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||| Sbjct 8400249 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAA 8400307 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 8400308 AGTTGGGGG 8400316 Score = 219 bits (242), Expect = 8e-55 Identities = 198/245 (81%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||||| Sbjct 27221630 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 27221689 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | ||| ||||| |||| | | ||| || ||||| ||||| Sbjct 27221690 ATAACATCATAGGAT-TCAGGTCCTATTATGTTAGCCTTCGGGATCGGAGTAATAATTAA 27221748 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| || |||| ||||||||||||||||||||| | Sbjct 27221749 CAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTATGAA 27221808 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 27221809 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 27221867 Query 314 AGGGG 318 |||| Sbjct 27221868 GGGGG 27221872 Score = 159 bits (176), Expect = 6e-37 Identities = 146/182 (80%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 ||| |||||||||| |||||||||| |||||||| |||| |||| | ||||||||||| Sbjct 13340275 ACTGTTACTTTGAAGAAATTAGAGTACTCAAAGCAAGCCTACGCTCTGTATACATTAGCA 13340334 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||| |||| | |||||| | |||| ||||| |||||| | ||| || ||||||| Sbjct 13340335 TGGGATAACATCATAGGAT-TCCGGTCCTATTATGTTGGCCTTCGGGATCGGAGTAATGA 13340393 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| | ||| ||||||||| | ||||| || ||||||||||||||||||||||||| Sbjct 13340394 TTAACACGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 13340453 Query 250 TT 251 || Sbjct 13340454 TT 13340455 >seq344 Length=88605 Score = 219 bits (242), Expect = 8e-55 Identities = 201/249 (81%), Gaps = 4/249 (2%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCAT 130 ||| |||||||||| ||||||||||| |||||||| |||| | | |||||||||||| Sbjct 77455 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGTCTGTATACATTAGCAT 77396 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT-TTCTAGGACCGCCGTAATGA 189 || |||| | |||||| | | || ||||| |||||| ||| || | || ||||||| Sbjct 77395 GGGATAACATCATAGGAT-TCCAGTCCTATTATGTTGGACTTCGAG-ATCGGAGTAATGA 77338 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| |||||||||| | ||||| || |||||||||||||||||||||||| Sbjct 77337 TTAACAGGGAAAGTCGGGGGTATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTG 77278 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | |||| ||| | || |||||| || ||||||||||||||||||||||| ||||||| Sbjct 77277 TGAAAGATGAACAATTGTGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAA 77219 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 77218 AGTTGGGGG 77210 >seq147 Length=783512 Score = 219 bits (242), Expect = 8e-55 Identities = 198/245 (81%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||||| Sbjct 698989 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 699048 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | ||| ||||| |||| | | ||| || ||||| ||||| Sbjct 699049 ATAACATCATAGGAT-TCAGGTCCTATTATGTTAGCCTTCGGGATCGGAGTAATAATTAA 699107 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| || |||| ||||||||||||||||||||| | Sbjct 699108 CAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTATGAA 699167 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 699168 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 699226 Query 314 AGGGG 318 |||| Sbjct 699227 GGGGG 699231 >seq808 Length=9131 Score = 206 bits (228), Expect = 5e-51 Identities = 200/252 (79%), Gaps = 9/252 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTC--GAATACATTAGC 128 |||||| ||| |||||| |||||||||| |||||| | |||| ||| | ||||| Sbjct 5427 TTTACTGTGAGAAAATTGGAGTGTTCAAGGCAGGCGTGGATTGCAACTGAACATGTTAGC 5486 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC--GCCGTAA 186 ||||||||||| ||||| | | ||| || ||||||||||||||||| | | |||| Sbjct 5487 ATGGAATAATAAGATAGGGC-TCCGGCTCCATTTTGTTGGTTTCTAGAGCGTGGGAGTAA 5545 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||| ||||||| ||| ||||||| |||||||| | |||||||||||||| ||||| Sbjct 5546 TGATTGATAGGGACAGTTGGGGGTGCTAGTATTCAGCGGCCAGAGGTGAAATTCATGGAT 5605 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 | |||||||| ||| ||||||||| |||||||||||||| || ||||||| |||| Sbjct 5606 TCGCTGAAGACTGACTTATGCGAAAGCATTCACCAAGGATGTCCTCTTTAATCA-AGAAC 5664 Query 307 GAAAGTTAGGGG 318 ||||||| |||| Sbjct 5665 GAAAGTTGGGGG 5676 >seq22 Length=40393389 Score = 192 bits (212), Expect = 1e-46 Identities = 198/254 (78%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 67 CAGG-ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACAT 124 |||| ||| |||||||||| ||||||||||| ||||||| |||| |||| | |||||| Sbjct 33417004 CAGGCACTGTTACTTTGAAGAAATTAGAGTGCCCAAAGCAAGCCTACGCTCTATATACAT 33416945 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||| ||| | |||||| |||| ||||| |||||| | ||| || || Sbjct 33416944 TAGCATGGGATAGCATCATAGGATAC-CGGTCCTATTATGTTGGCCTTCGGGATCGGAGT 33416886 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||| | ||||| || ||||| | ||||| || || | ||||||||||||||| Sbjct 33416885 AATGATTGACAGGGACAGCTGGGGGCATTCGTATTTCATAGTTATAGGTGAAATTCTTGG 33416826 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 |||||| ||||| ||| ||||||||||| || |||||||||||| |||||| | || Sbjct 33416825 ATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTAAATTAATGA-AGA 33416767 Query 305 ACGAAAGTTAGGGG 318 ||||||||| |||| Sbjct 33416766 ACGAAAGTTGGGGG 33416753 >seq43 Length=26577699 Score = 116 bits (128), Expect = 7e-24 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 91 AGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACG 149 |||||| |||||||| |||| || | ||| |||||||||| ||| | |||||| Sbjct 21126814 AGAGTGCTCAAAGCAAGCCTACACTATGTATAGATTAGCATGGG-TAACATCATAGGATT 21126756 Query 150 TGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGG 209 | ||| ||||| ||||| | | ||| || ||||||||||| ||||| ||| ||| Sbjct 21126755 TT-GGTCCTATTATGTTGTCCT-TCGGATCGAAGTAATGATTAACAGGGACAGTGTGGGA 21126698 Query 210 TGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269 | ||| | || || | | ||||||||||||||||||| ||||| | || | || Sbjct 21126697 CATTTGTACTTCATAGTTACACGTGAAATTCTTGGATTTATGAAAGACGTATAACCGTGA 21126638 Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| || ||||||||| |||||||||||| ||| ||||||| Sbjct 21126637 AAGCATTTGCCAAGGATG-TTTCATTAATCA-AGAATGAAAGTT 21126596 >seq1036 Length=7046 Score = 96.9 bits (106), Expect = 6e-18 Identities = 93/118 (79%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 201 AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260 || |||||| | ||||| ||| ||||||||||||||||||| ||||| || Sbjct 3195 AGACGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAA 3136 Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||| || ||||| |||||||||||||||| |||||||||| || || Sbjct 3135 CTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTCAGAGG 3079 >seq2603 Length=970 Score = 78.8 bits (86), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 6/103 (6%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTC--GAATACATTAGC 128 |||||| ||| |||||| |||||||||| |||||| | |||| ||| | ||||| Sbjct 283 TTTACTGTGAGAAAATTGGAGTGTTCAAGGCAGGCGTGGATTGCAACTGAACATGTTAGC 224 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT 171 ||||||||||| ||||| | | ||| || ||||||||||||| Sbjct 223 ATGGAATAATAAGATAGGGC-TCCGGCTCCATTTTGTTGGTTT 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914831668608