Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01000370.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq36963 163 3e-38
seq13320 152 5e-35
seq39559 113 4e-23
seq21846 100 3e-19
seq4196 98.7 9e-19
seq3152 96.9 3e-18
seq28532 95.1 1e-17
seq5411 95.1 1e-17
seq34098 93.3 4e-17
seq9101 93.3 4e-17
seq3482 91.5 1e-16
seq20423 86.0 6e-15
seq20233 86.0 6e-15
seq23143 82.4 7e-14
seq4679 75.2 1e-11
>seq36963
Length=1246
Score = 163 bits (180), Expect = 3e-38
Identities = 142/173 (82%), Gaps = 5/173 (3%)
Strand=Plus/Plus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
|| |||||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||||
Sbjct 64 GGGGGATGCCTAGGCTCTCAGAGGCGATGAAGG-CGTGATAAGCTGCGAAAAGCTGCGGG 122
Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127
|| |||||| || ||||||||| ||||| |||||||||||||||| ||| ||| |||
Sbjct 123 GACGGGCACACACCGATTGATCCGCAGATA-CCGAATGGGGCAACCCACTATGTTGAAGA 181
Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180
||| | | || |||| | ||| ||| | |||||||||||||||||||
Sbjct 182 CATAGTACACCGATAGG---TGGGCAAACCCGCTGAACTGAAACATCTAAGTA 231
>seq13320
Length=738
Score = 152 bits (168), Expect = 5e-35
Identities = 101/112 (90%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61
||| |||| | |||||| ||||||| ||||||| |||||||| |||||||||||| ||||
Sbjct 381 GCACACGGGGAATGCCTTGGCTCTCAGAGGCGATGAAGGACGCGATAAGCTGCGATAAGC 440
Query 62 TACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC 113
|||||| |||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 441 TACGGGTATTGGCACATACGAATTGATCCGTAGATTTCCGAATGGGGAAACC 492
>seq39559
Length=1028
Score = 113 bits (124), Expect = 4e-23
Identities = 131/174 (75%), Gaps = 7/174 (4%)
Strand=Plus/Minus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
|| |||||||||||| | |||||||||||||||||| |||||||||| ||||| ||||
Sbjct 606 GGCGGATGCCTAGGCGTTGAGAGGCGAAGAAGGACGTGGTAAGCTGCGATAAGCTTCGGG 547
Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127
| ||| | | | || ||||| |||| |||||||||| ||||| | || | || ||
Sbjct 546 TAGCTGCATACAAGCGTTAATCCGGAGATTTCCGAATGGGACAACCTGGTACACTGAAGG 487
Query 128 TATATCATAACGCTAGGCGTTAG-GCGAACGTGGGGAACTGAAACATCTAAGTA 180
| ||||| || || || || ||| |||||||||||||||||||||
Sbjct 486 TGTATCA-CTCGAAAG-----AGAGCCAACCCAGGGAACTGAAACATCTAAGTA 439
>seq21846
Length=616
Score = 100 bits (110), Expect = 3e-19
Identities = 135/183 (74%), Gaps = 14/183 (8%)
Strand=Plus/Minus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
||||||||||| ||| | |||||| ||||||||||| | |||||| ||||| ||||
Sbjct 580 GGTGGATGCCTTGGCAATGATAGGCGACGAAGGACGTGAAAGCCTGCGATAAGCTTCGGG 521
Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC-------GATAT 119
|| ||||| ||| | |||||||| |||| ||||||||||| ||||| | |
Sbjct 520 GAGCTGGCAAATAAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCCACCTGCAAAGGT 461
Query 120 ATTGGAGA-TATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAA 177
|| | | | | || |||| | || ||| |||||||| || |||||||||||||| |
Sbjct 460 ATCGCATACTGAATACATA--GGTATGCG--AGGCGAACCGGGTGAACTGAAACATCTCA 405
Query 178 GTA 180
|||
Sbjct 404 GTA 402
>seq4196
Length=902
Score = 98.7 bits (108), Expect = 9e-19
Identities = 117/155 (75%), Gaps = 8/155 (5%)
Strand=Plus/Minus
Query 28 GAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGATTGGCACATACGAATT-G 86
|||||||||||||||||| |||||||||| |||| | | || ||||| | | |||
Sbjct 899 GAGGCGAAGAAGGACGTGGTAAGCTGCGATAAGCCAGGAAGAGCTGCACACAAGCATTAT 840
Query 87 ATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGATATATCATAACGCTAGGCG 146
|||| | ||| |||||||||| ||||||| || ||| ||| ||||| || ||
Sbjct 839 ATCCCTGGATTTCCGAATGGGTCAACCCGGTACGTTGAAGACGTATCA-CTCGAAAG--- 784
Query 147 TTAG-GCGAACGTGGGGAACTGAAACATCTAAGTA 180
|| || ||| ||||||||||||||||||||||
Sbjct 783 --AGAGCCAACCCGGGGAACTGAAACATCTAAGTA 751
>seq3152
Length=962
Score = 96.9 bits (106), Expect = 3e-18
Identities = 87/108 (81%), Gaps = 1/108 (1%)
Strand=Plus/Plus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
||||||||||| ||| | |||||| ||||||||||||| |||||| ||||| ||||
Sbjct 685 GGTGGATGCCTTGGCGATTACAGGCGACGAAGGACGTGATAGCCTGCGATAAGCTTCGGG 744
Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
|| ||||| || | |||||||| |||| ||||||||||| |||||
Sbjct 745 GAGCTGGCAAATTAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCC 792
>seq28532
Length=545
Score = 95.1 bits (104), Expect = 1e-17
Identities = 86/107 (80%), Gaps = 1/107 (1%)
Strand=Plus/Minus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
||||||||||| ||| | |||||| ||||||||||||| ||||||| |||| ||||
Sbjct 539 GGTGGATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATAAGCGTCGGG 480
Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
|| || |||| ||||||||||||| ||||||||||| |||||
Sbjct 479 GAGGTGCGAATAC-CCTTGATCCGTAGATTTCCGAATGGGGAAACCC 434
>seq5411
Length=896
Score = 95.1 bits (104), Expect = 1e-17
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
||||||||||| ||| | |||||||||||||||||||| |||||||||||| |||
Sbjct 360 GGTGGATGCCTTGGCATGCACAGGCGAAGAAGGACGTGATACGCTGCGAAAAGCCGTGGG 419
Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
|| || || | ||||||| | ||| |||||||||||||||||
Sbjct 420 GAGCTGCGAATGAGCTTTGATCCATGGATCTCCGAATGGGGCAACCC 466
>seq34098
Length=1908
Score = 93.3 bits (102), Expect = 4e-17
Identities = 90/112 (80%), Gaps = 4/112 (4%)
Strand=Plus/Plus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
|| |||||||| ||| || ||||||| |||||||||| | ||||||| ||||| ||||
Sbjct 850 GGCGGATGCCTTGGCACTGAGAGGCGATGAAGGACGTGGCAGGCTGCGATAAGCTTCGGG 909
Query 68 GA-TTGGCA-CATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGAT 117
|| ||| || || || |||||||| |||| ||||||||||| ||||| ||
Sbjct 910 GAGTTGCCAGCACACT--TTGATCCGAAGATTTCCGAATGGGGAAACCCCAT 959
>seq9101
Length=810
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/107 (81%), Gaps = 4/107 (4%)
Strand=Plus/Plus
Query 10 TGGATGCCTAGGC-TC-TCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
||||||||| ||| || || |||||| |||||||| ||||||||| ||||| ||||
Sbjct 532 TGGATGCCTTGGCGTCATC--AGGCGACGAAGGACGCAGCAAGCTGCGATAAGCTTCGGG 589
Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
|| ||||| ||| |||||||| |||| |||||||||||||||||
Sbjct 590 GAGCGGCACGCACGCTTTGATCCGGAGATTTCCGAATGGGGCAACCC 636
>seq3482
Length=949
Score = 91.5 bits (100), Expect = 1e-16
Identities = 125/172 (73%), Gaps = 11/172 (6%)
Strand=Plus/Minus
Query 9 GTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGG 68
|||||||||| ||| | |||||| ||||||||| ||| ||||||| |||| |||||
Sbjct 915 GTGGATGCCTTGGCGTGCACAGGCGATGAAGGACGTAATACGCTGCGATAAGCGTCGGGG 856
Query 69 ATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGAT 128
| || ||| | |||||||| ||| ||||||||||| ||||||| ||| |
Sbjct 855 AGCTGCGAATAAGCTTTGATCCGATGATTTCCGAATGGGGAAACCCGA-CCATT-----T 802
Query 129 ATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180
| ||| || ||| || ||| |||||||||||||||||||||||
Sbjct 801 AGGTCA-CCCGAAAGG----GAGCTAACCTGGGGAACTGAAACATCTAAGTA 755
>seq20423
Length=637
Score = 86.0 bits (94), Expect = 6e-15
Identities = 90/115 (78%), Gaps = 4/115 (3%)
Strand=Plus/Minus
Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61
||| ||||||||||||| ||| || ||||||| |||||||||| | |||||||||||
Sbjct 152 GCATACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGC 93
Query 62 TACGGGGA-TTGGCA-CATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
||| || |||||| || || ||| ||| ||| ||||||||||| |||||
Sbjct 92 ATCGGTGAGTTGGCAGCAAAC--TGTGACCCGGTGATGTCCGAATGGGGAAACCC 40
>seq20233
Length=638
Score = 86.0 bits (94), Expect = 6e-15
Identities = 90/115 (78%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61
||| ||||||||||||| ||| || ||||||| |||||||||| | |||||||||||
Sbjct 487 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGC 546
Query 62 TACGGGGA-TTGGCA-CATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
||| || | |||| || || |||| ||| ||| ||||||||||| |||||
Sbjct 547 ACCGGTGAGTCGGCAGCAGAC--TTTGACCCGGTGATGTCCGAATGGGGAAACCC 599
>seq23143
Length=603
Score = 82.4 bits (90), Expect = 7e-14
Identities = 83/107 (78%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 10 TGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGA 69
||||||||| |||| |||||| |||||||| ||||||||| ||||| ||||||
Sbjct 170 TGGATGCCTTGGCTTCATCAGGCGACGAAGGACGCAGCAAGCTGCGATAAGCTTCGGGGA 229
Query 70 TTGGCACATACGA-ATTGATCCGTAGATATCCGAATGGGGCAACCCG 115
||||| ||| || ||||| |||| ||||||||||| ||||||
Sbjct 230 GCGGCACGCACGCTATATATCCGAAGATTTCCGAATGGGGAAACCCG 276
>seq4679
Length=918
Score = 75.2 bits (82), Expect = 1e-11
Identities = 87/115 (76%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61
||| ||||||||||||| ||| || ||||||| |||||||||| | ||||||||||
Sbjct 512 GCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGT 571
Query 62 TACGGGG--ATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
||||| ||||| | | | ||||||| || ||||||||||| |||||
Sbjct 572 GTCGGGGGAGCTGGCA-ACAAGCTTTGATCCCGCAATGTCCGAATGGGGAAACCC 625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476614103726
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |