Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq36963 163 3e-38 seq13320 152 5e-35 seq39559 113 4e-23 seq21846 100 3e-19 seq4196 98.7 9e-19 seq3152 96.9 3e-18 seq28532 95.1 1e-17 seq5411 95.1 1e-17 seq34098 93.3 4e-17 seq9101 93.3 4e-17 seq3482 91.5 1e-16 seq20423 86.0 6e-15 seq20233 86.0 6e-15 seq23143 82.4 7e-14 seq4679 75.2 1e-11 >seq36963 Length=1246 Score = 163 bits (180), Expect = 3e-38 Identities = 142/173 (82%), Gaps = 5/173 (3%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||| Sbjct 64 GGGGGATGCCTAGGCTCTCAGAGGCGATGAAGG-CGTGATAAGCTGCGAAAAGCTGCGGG 122 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 || |||||| || ||||||||| ||||| |||||||||||||||| ||| ||| ||| Sbjct 123 GACGGGCACACACCGATTGATCCGCAGATA-CCGAATGGGGCAACCCACTATGTTGAAGA 181 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||| | | || |||| | ||| ||| | ||||||||||||||||||| Sbjct 182 CATAGTACACCGATAGG---TGGGCAAACCCGCTGAACTGAAACATCTAAGTA 231 >seq13320 Length=738 Score = 152 bits (168), Expect = 5e-35 Identities = 101/112 (90%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| |||| | |||||| ||||||| ||||||| |||||||| |||||||||||| |||| Sbjct 381 GCACACGGGGAATGCCTTGGCTCTCAGAGGCGATGAAGGACGCGATAAGCTGCGATAAGC 440 Query 62 TACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC 113 |||||| |||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 441 TACGGGTATTGGCACATACGAATTGATCCGTAGATTTCCGAATGGGGAAACC 492 >seq39559 Length=1028 Score = 113 bits (124), Expect = 4e-23 Identities = 131/174 (75%), Gaps = 7/174 (4%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||||||| | |||||||||||||||||| |||||||||| ||||| |||| Sbjct 606 GGCGGATGCCTAGGCGTTGAGAGGCGAAGAAGGACGTGGTAAGCTGCGATAAGCTTCGGG 547 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 | ||| | | | || ||||| |||| |||||||||| ||||| | || | || || Sbjct 546 TAGCTGCATACAAGCGTTAATCCGGAGATTTCCGAATGGGACAACCTGGTACACTGAAGG 487 Query 128 TATATCATAACGCTAGGCGTTAG-GCGAACGTGGGGAACTGAAACATCTAAGTA 180 | ||||| || || || || ||| ||||||||||||||||||||| Sbjct 486 TGTATCA-CTCGAAAG-----AGAGCCAACCCAGGGAACTGAAACATCTAAGTA 439 >seq21846 Length=616 Score = 100 bits (110), Expect = 3e-19 Identities = 135/183 (74%), Gaps = 14/183 (8%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||||| | |||||| ||||| |||| Sbjct 580 GGTGGATGCCTTGGCAATGATAGGCGACGAAGGACGTGAAAGCCTGCGATAAGCTTCGGG 521 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC-------GATAT 119 || ||||| ||| | |||||||| |||| ||||||||||| ||||| | | Sbjct 520 GAGCTGGCAAATAAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCCACCTGCAAAGGT 461 Query 120 ATTGGAGA-TATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAA 177 || | | | | || |||| | || ||| |||||||| || |||||||||||||| | Sbjct 460 ATCGCATACTGAATACATA--GGTATGCG--AGGCGAACCGGGTGAACTGAAACATCTCA 405 Query 178 GTA 180 ||| Sbjct 404 GTA 402 >seq4196 Length=902 Score = 98.7 bits (108), Expect = 9e-19 Identities = 117/155 (75%), Gaps = 8/155 (5%) Strand=Plus/Minus Query 28 GAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGATTGGCACATACGAATT-G 86 |||||||||||||||||| |||||||||| |||| | | || ||||| | | ||| Sbjct 899 GAGGCGAAGAAGGACGTGGTAAGCTGCGATAAGCCAGGAAGAGCTGCACACAAGCATTAT 840 Query 87 ATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGATATATCATAACGCTAGGCG 146 |||| | ||| |||||||||| ||||||| || ||| ||| ||||| || || Sbjct 839 ATCCCTGGATTTCCGAATGGGTCAACCCGGTACGTTGAAGACGTATCA-CTCGAAAG--- 784 Query 147 TTAG-GCGAACGTGGGGAACTGAAACATCTAAGTA 180 || || ||| |||||||||||||||||||||| Sbjct 783 --AGAGCCAACCCGGGGAACTGAAACATCTAAGTA 751 >seq3152 Length=962 Score = 96.9 bits (106), Expect = 3e-18 Identities = 87/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||||||| |||||| ||||| |||| Sbjct 685 GGTGGATGCCTTGGCGATTACAGGCGACGAAGGACGTGATAGCCTGCGATAAGCTTCGGG 744 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || ||||| || | |||||||| |||| ||||||||||| ||||| Sbjct 745 GAGCTGGCAAATTAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCC 792 >seq28532 Length=545 Score = 95.1 bits (104), Expect = 1e-17 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||||||| ||||||| |||| |||| Sbjct 539 GGTGGATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATAAGCGTCGGG 480 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || |||| ||||||||||||| ||||||||||| ||||| Sbjct 479 GAGGTGCGAATAC-CCTTGATCCGTAGATTTCCGAATGGGGAAACCC 434 >seq5411 Length=896 Score = 95.1 bits (104), Expect = 1e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||||||||||||||||| |||||||||||| ||| Sbjct 360 GGTGGATGCCTTGGCATGCACAGGCGAAGAAGGACGTGATACGCTGCGAAAAGCCGTGGG 419 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || || | ||||||| | ||| ||||||||||||||||| Sbjct 420 GAGCTGCGAATGAGCTTTGATCCATGGATCTCCGAATGGGGCAACCC 466 >seq34098 Length=1908 Score = 93.3 bits (102), Expect = 4e-17 Identities = 90/112 (80%), Gaps = 4/112 (4%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||| ||| || ||||||| |||||||||| | ||||||| ||||| |||| Sbjct 850 GGCGGATGCCTTGGCACTGAGAGGCGATGAAGGACGTGGCAGGCTGCGATAAGCTTCGGG 909 Query 68 GA-TTGGCA-CATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGAT 117 || ||| || || || |||||||| |||| ||||||||||| ||||| || Sbjct 910 GAGTTGCCAGCACACT--TTGATCCGAAGATTTCCGAATGGGGAAACCCCAT 959 >seq9101 Length=810 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/107 (81%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 10 TGGATGCCTAGGC-TC-TCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||| ||| || || |||||| |||||||| ||||||||| ||||| |||| Sbjct 532 TGGATGCCTTGGCGTCATC--AGGCGACGAAGGACGCAGCAAGCTGCGATAAGCTTCGGG 589 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || ||||| ||| |||||||| |||| ||||||||||||||||| Sbjct 590 GAGCGGCACGCACGCTTTGATCCGGAGATTTCCGAATGGGGCAACCC 636 >seq3482 Length=949 Score = 91.5 bits (100), Expect = 1e-16 Identities = 125/172 (73%), Gaps = 11/172 (6%) Strand=Plus/Minus Query 9 GTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGG 68 |||||||||| ||| | |||||| ||||||||| ||| ||||||| |||| ||||| Sbjct 915 GTGGATGCCTTGGCGTGCACAGGCGATGAAGGACGTAATACGCTGCGATAAGCGTCGGGG 856 Query 69 ATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGAT 128 | || ||| | |||||||| ||| ||||||||||| ||||||| ||| | Sbjct 855 AGCTGCGAATAAGCTTTGATCCGATGATTTCCGAATGGGGAAACCCGA-CCATT-----T 802 Query 129 ATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 | ||| || ||| || ||| ||||||||||||||||||||||| Sbjct 801 AGGTCA-CCCGAAAGG----GAGCTAACCTGGGGAACTGAAACATCTAAGTA 755 >seq20423 Length=637 Score = 86.0 bits (94), Expect = 6e-15 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| |||||||||| | ||||||||||| Sbjct 152 GCATACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGC 93 Query 62 TACGGGGA-TTGGCA-CATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || |||||| || || ||| ||| ||| ||||||||||| ||||| Sbjct 92 ATCGGTGAGTTGGCAGCAAAC--TGTGACCCGGTGATGTCCGAATGGGGAAACCC 40 >seq20233 Length=638 Score = 86.0 bits (94), Expect = 6e-15 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| |||||||||| | ||||||||||| Sbjct 487 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGC 546 Query 62 TACGGGGA-TTGGCA-CATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || | |||| || || |||| ||| ||| ||||||||||| ||||| Sbjct 547 ACCGGTGAGTCGGCAGCAGAC--TTTGACCCGGTGATGTCCGAATGGGGAAACCC 599 >seq23143 Length=603 Score = 82.4 bits (90), Expect = 7e-14 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 10 TGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGA 69 ||||||||| |||| |||||| |||||||| ||||||||| ||||| |||||| Sbjct 170 TGGATGCCTTGGCTTCATCAGGCGACGAAGGACGCAGCAAGCTGCGATAAGCTTCGGGGA 229 Query 70 TTGGCACATACGA-ATTGATCCGTAGATATCCGAATGGGGCAACCCG 115 ||||| ||| || ||||| |||| ||||||||||| |||||| Sbjct 230 GCGGCACGCACGCTATATATCCGAAGATTTCCGAATGGGGAAACCCG 276 >seq4679 Length=918 Score = 75.2 bits (82), Expect = 1e-11 Identities = 87/115 (76%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| |||||||||| | |||||||||| Sbjct 512 GCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGT 571 Query 62 TACGGGG--ATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||||| ||||| | | | ||||||| || ||||||||||| ||||| Sbjct 572 GTCGGGGGAGCTGGCA-ACAAGCTTTGATCCCGCAATGTCCGAATGGGGAAACCC 625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476614103726