Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq23724 181 1e-43 seq5225 156 4e-36 seq4893 152 5e-35 seq6614 138 1e-30 seq4392 122 9e-26 seq6263 118 1e-24 seq31559 102 9e-20 seq20287 102 9e-20 seq7914 89.7 5e-16 seq40246 86.0 7e-15 seq27127 84.2 2e-14 seq331 84.2 2e-14 seq19242 82.4 8e-14 seq28795 80.6 3e-13 seq21987 77.0 3e-12 seq15983 77.0 3e-12 >seq23724 Length=580 Score = 181 bits (200), Expect = 1e-43 Identities = 145/175 (83%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||||| | |||||| |||||| ||| ||||||||||||| || Sbjct 178 CGTAAACCGACACAGGTAGTCGAGAAGAATATTCTAAGGTGCTCGAGTGAATCACGGCTA 119 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| | ||||||||||||||||| || ||| ||| | | | || | || Sbjct 118 AGGAACTCGGCAAATTAACCCTGTAACTTCGGGAGAAGGGGAGCCTCCTCTGCAAAGAGA 59 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||||||| || |||||| |||||||| ||||||||||||||| |||||| Sbjct 58 GGCCGCAGAGAAATGGCCCAGGCGACTGTTTAGCAAAAACACAGGGCTCTGCCAA 4 >seq5225 Length=903 Score = 156 bits (172), Expect = 4e-36 Identities = 140/175 (80%), Gaps = 7/175 (4%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||||| | || ||| |||||||||| ||||||| |||||||| Sbjct 162 CGTAAACCGACACAGGTAGTCGAGGAGAGTATCCTAAGGCGCTCGAGTGAACCACGGTTA 221 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 |||||||||||||| | ||| |||||||||||| || ||| ||| || | | Sbjct 222 AGGAACTAGGCAAATTAGCCCCGTAACTTCGGGAGAAGGGG----CACCACGA---GAGT 274 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||| ||| |||||||||| |||||||| |||||||||||| || |||||| Sbjct 275 GGTCGCAGTGAAGAGGTCCAGGCGACTGTTTAGCAAAAACACAGGACTCTGCCAA 329 >seq4893 Length=910 Score = 152 bits (168), Expect = 5e-35 Identities = 140/175 (80%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||||| | || || |||||| ||| |||||| ||| || || Sbjct 698 CGTAAACCGACACAGGTAGTCGAGGAGAGAATCCTAAGGTGCTCGAGTGATTCATGGCTA 757 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| || |||||||||||||||| || ||| ||| | || ||| || Sbjct 758 AGGAACTCGGCAAAATGGCCCTGTAACTTCGGGAGAAGGGGCGCCT--CTAGCAAT-AGA 814 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||| ||| ||| |||||| ||||||||||||||||||| |||| ||| || Sbjct 815 GGCCGCAGTGAAAAGGCCCAGGCGACTGTTTAACAAAAACACATGGCTTTGCTAA 869 >seq6614 Length=860 Score = 138 bits (152), Expect = 1e-30 Identities = 137/175 (78%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||| | | || || |||||| ||| ||| || ||| || || Sbjct 237 CGTAAACCGACACAGGTAGTTGAGGAGAGAATCCTAAGGTGCTCGAGAGATTCATGGCTA 296 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||| |||||||| | ||||||||||||||| ||| |||| | | ||| ||| | Sbjct 297 AGGAATTAGGCAAAATAGACCTGTAACTTCGGGAGAAA-GGTCGCCCCGCAGCAAT--CA 353 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||| ||| |||||||||| |||||||| ||||||||||||||| ||| || Sbjct 354 GGCCGCAGTGAAGAGGTCCAGGCGACTGTTTATCAAAAACACAGGGCTCTGCAAA 408 >seq4392 Length=923 Score = 122 bits (134), Expect = 9e-26 Identities = 135/176 (77%), Gaps = 7/176 (4%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || ||||| |||||||||||| |||| | | |||| Sbjct 801 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGGGAATGGTGTTGAAGG 742 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCC-CTACCCAGAAATGG---G 140 ||||||||||| | ||| ||||||||||||||| ||| || ||| | | | | | Sbjct 741 AACTAGGCAAATTACCCCCGTAACTTCGGGATAAGGGGGCCTCTATC--GGTCTCGATAG 684 Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 |||| ||| | | |||| |||||||||||||||||||||||||||| ||| || Sbjct 683 AGGG-GCACAAACTAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCTAA 629 >seq6263 Length=875 Score = 118 bits (130), Expect = 1e-24 Identities = 134/177 (76%), Gaps = 7/177 (4%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||||| | ||| ||| |||||||||| | |||| | ||| | Sbjct 622 CGTAAACCGACACAGGTAGTCGAGATGAGTATTCTAAGGCGCTCGGGTGAGCCGCGGAGA 681 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACC-CAGAAATGGG 140 |||||||||||||| | | ||||||||||||||||||| | |||| ||| || | Sbjct 682 AGGAACTAGGCAAATTAATGCTGTAACTTCGGGATAAAG----CATACCACAGCGAT--G 735 Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAAT 197 || | ||| || ||| || |||||||||| |||||||| ||||| ||| ||| Sbjct 736 TGGTCACAGTAAAATGGTTCAACCAACTGTTTAGCAAAAACATAGGGCCCTGCAAAT 792 >seq31559 Length=506 Score = 102 bits (112), Expect = 9e-20 Identities = 132/180 (73%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || ||||| |||||||||||| ||| | | | |||| Sbjct 468 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGCTGAAGG 409 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA--AGG----GTCCCTACCCAGAAATG 138 |||| ||||| | | | ||||||||||||||| ||| || | ||| || | Sbjct 408 AACTCGGCAATTTACCTCCGTAACTTCGGGATAAGGAGGCCCAGTGCTTACGCAAGCTAG 349 Query 139 GGA--GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | | ||| ||| ||| ||| |||||||||||||||||||||||||||| ||| || Sbjct 348 GCATTGGGGGCACAGACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAA 289 >seq20287 Length=630 Score = 102 bits (112), Expect = 9e-20 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||||| | || || |||||| ||| |||||||||| || || Sbjct 113 CGTAAACCGACACAGGTAGTCGAGGAGAGAATCCTAAGGTGCTCGAGTGAATCATGGCTA 54 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGG 122 ||||||| |||||| || |||||||||||||||| || ||| Sbjct 53 AGGAACTCGGCAAAATGGCCCTGTAACTTCGGGAGAAGGGG 13 >seq7914 Length=825 Score = 89.7 bits (98), Expect = 5e-16 Identities = 125/175 (71%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| || | |||| |||||||| |||||| ||||||| | |||| Sbjct 725 CGCAAACCGACACAGGTGGGTGGGTAGAATATACCAAGGCGAAAGAGTGAAACCTCGTTA 666 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||| || || |||||||||| | || || | || | | || Sbjct 665 AGGAACTCTGCAATCTAGTCCCGTAACTTCGGAAGAAGGGATGCCCAAGCTTGCTTG--- 609 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||| ||| || || | |||||||| ||||||||||| |||||||| Sbjct 608 GGTCGCAGTGAAAGGGGACAACCGACTGTTTATCAAAAACACAGCATTGTGCCAA 554 >seq40246 Length=368801 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 126914 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 126855 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 126854 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 126815 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 214291 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 214350 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 214351 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 214390 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 350264 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 350323 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 350324 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 350363 >seq27127 Length=557 Score = 84.2 bits (92), Expect = 2e-14 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||| | |||||| || | | || ||| | |||||| | | | ||| | || | Sbjct 102 CGCAATCCGACACAGGTGTGCTAGGCGAGTATCCGAAGGCGTTCGGGAGAACCCTCGTGA 161 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| |||||| ||| |||||| |||| |||| | | | || || Sbjct 162 AGGAACTCGGCAAAATGACCCCGTACCTTCGGTATAAGGGGTGCTCAGGG-GCAACCCGA 220 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | |||||||||| || | || |||||||| |||||||||||| || |||||| Sbjct 221 GC-CGCAGAGAATCGGCTCTAGCGACTGTTTATCAAAAACACAGGACTCTGCCAA 274 >seq331 Length=107979 Score = 84.2 bits (92), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | || ||| | Sbjct 52160 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAA--G 52217 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || || || || ||| || ||| |||||||| |||||||||||| || Sbjct 52218 GGGGTCGAAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 52267 >seq19242 Length=650 Score = 82.4 bits (90), Expect = 8e-14 Identities = 129/180 (72%), Gaps = 10/180 (6%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || ||| ||| || ||||| |||||||||||| ||| | | |||| Sbjct 394 AAACCGACACAGGTGGTCAGGTAGAGTATACCAAGGCGCTTGAGAGAACTGTGCTGAAGG 453 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCT-ACCCAG----AAATGG 139 |||| |||||| || | |||||||||| || ||| || || |||||| | ||| Sbjct 454 AACTCGGCAAATTGCACGCGTAACTTCGGAAT-AAGCGTGACTCACCCAGCGCAAGCTGG 512 Query 140 ---GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||| | ||| | ||| || |||||||| ||||||||||||||| ||| || Sbjct 513 ACTGAGTG-GCACAAGCCAGGGGGTAGCGACTGTTTAGCAAAAACACAGGGCTCTGCGAA 571 >seq28795 Length=541 Score = 80.6 bits (88), Expect = 3e-13 Identities = 128/181 (71%), Gaps = 11/181 (6%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 ||||| ||||| |||| || | || || ||||||||| | | ||| |||||||| Sbjct 453 AAACG-ACACAGGTAGGCGAGGCGAGTAGCCTAAGGCGCGCGGGAGAACGGTGGTTAAGG 395 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGG-TCCCTAC--------CCAGAA 135 |||| ||||| | ||| ||||||||||||||| ||| |||| | || | Sbjct 394 AACTCTGCAAATTTTCCCCGTAACTTCGGGATAAGGGGCGCCCTGCGATGTGTTAAAGCA 335 Query 136 ATGGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCA 195 || | || ||||| |||| || | || |||||||| |||||||||||| || ||| | Sbjct 334 TTGCGGGGCCGCAG-GAATTGGCTCTAGCGACTGTTTATCAAAAACACAGGACTCTGCGA 276 Query 196 A 196 | Sbjct 275 A 275 >seq21987 Length=612 Score = 77.0 bits (84), Expect = 3e-12 Identities = 79/102 (77%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | |||||| |||| |||||||||||| ||| | | |||| Sbjct 117 AAACCGACACAGGTGGACTGGTTGAGAATACCAAGGCGCTTGAGAGAACTATCTTGAAGG 58 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA-AGGGTCC 125 ||||||||||| || || |||||||||| | || |||| || Sbjct 57 AACTAGGCAAATTGCCCTCGTAACTTCGGAAGAAGAGGGCCC 16 >seq15983 Length=684 Score = 77.0 bits (84), Expect = 3e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| ||| || || | |||| ||||||| | ||||||| |||| ||| || |||| Sbjct 395 CAAACCGACTCAGGTGGGCGGGGTGAATATCCCAAGGCGCGTGAGAGAACTCTGGCTAAG 454 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 ||||| |||||| ||| | |||||||||||| || Sbjct 455 GAACTCGGCAAATTGATACCGTAACTTCGGGAGAA 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530992894084