Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq40083 123 2e-26 seq2729 109 5e-22 seq13052 105 6e-21 seq27127 104 2e-20 seq15983 104 2e-20 seq5225 104 2e-20 seq31559 102 8e-20 seq28795 95.1 1e-17 seq6614 95.1 1e-17 seq40246 91.5 1e-16 seq19242 91.5 1e-16 seq4392 91.5 1e-16 seq187 87.8 2e-15 seq12686 84.2 2e-14 seq331 78.8 9e-13 seq96 78.8 9e-13 seq6263 77.0 3e-12 seq343 75.2 1e-11 seq116 73.4 4e-11 >seq40083 Length=1008 Score = 123 bits (136), Expect = 2e-26 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 37 AGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCT 96 ||| || ||||||| ||| | ||| | ||||||||||| |||||||||||||||| Sbjct 382 AGCACAGTCCGGTCGCAGAGAAGAGGGAGAAGCGACTGTTTAACAAAAACACAGCACTCT 323 Query 97 GCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||| || ||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 322 GCAAAATCGTAAGATGACGTATAGGGTGTGACGCCTGCCCGGTGCTGGAAGGTTAA 267 >seq2729 Length=971 Score = 109 bits (120), Expect = 5e-22 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| |||||| || | | || | |||||||||||| ||| Sbjct 904 GCGACTGTTTACTAAAAACACAGGGCTCTGCGAAGATGCAAATCGACGTATAGGGTCTGA 845 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAATTG 155 ||||||||||||||||||||||||| || Sbjct 844 CGCCTGCCCGGTGCCGGAAGGTTAAATG 817 >seq13052 Length=729 Score = 105 bits (116), Expect = 6e-21 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| |||||||||| ||||||| |||||| ||||||| |||||| || ||| Sbjct 589 GCGACTGTTTATCAAAAACACAGGACTCTGCTAACACGCAAGTGGATGTATAGAGTCTGA 530 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||| || ||||||| Sbjct 529 CGCCTGCCCGGTG-TGGTAGGTTAA 506 >seq27127 Length=557 Score = 104 bits (114), Expect = 2e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| |||||||||| ||||||| ||| || ||| |||||||||| || ||| Sbjct 241 GCGACTGTTTATCAAAAACACAGGACTCTGCCAACTCGCAAGAGGACGTATAGAGTCTGA 300 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| ||||| ||| ||||||| Sbjct 301 CGCCTGCTCGGTGTCGGTAGGTTAA 325 >seq15983 Length=684 Score = 104 bits (114), Expect = 2e-20 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 61 GGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAG 120 ||| | || ||||||||| ||||||||||| ||||||| || || ||| ||||||||| Sbjct 550 GGCGGTTGTGACTGTTTACTAAAAACACAGGACTCTGCGAAGTCGTAAGACGACGTATAG 609 Query 121 GGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| ||| ||||||||||||| |||||||||| Sbjct 610 GGTCTGATGCCTGCCCGGTGCTGGAAGGTTAA 641 >seq5225 Length=903 Score = 104 bits (114), Expect = 2e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| ||||||| || |||||| || ||||||||| ||| Sbjct 296 GCGACTGTTTAGCAAAAACACAGGACTCTGCCAAATCGAAAGATGAAGTATAGGGTCTGA 355 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 | ||||||||||||||||||||||| Sbjct 356 CACCTGCCCGGTGCCGGAAGGTTAA 380 >seq31559 Length=506 Score = 102 bits (112), Expect = 8e-20 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | || |||||||| |||||||||| |||||| || || ||| ||||| Sbjct 333 ACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAAATCGTAAGATGACGT 274 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| |||||||||||||||||||||||||||| Sbjct 273 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 238 >seq28795 Length=541 Score = 95.1 bits (104), Expect = 1e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| |||||||||| ||||||| ||| || ||| ||| |||||| | ||| Sbjct 308 GCGACTGTTTATCAAAAACACAGGACTCTGCGAACTCGTAAGAGGATGTATAGAGACTGA 249 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| ||||||||| | ||||| Sbjct 248 CGCCTGCTCGGTGCCGGTAAGTTAA 224 >seq6614 Length=860 Score = 95.1 bits (104), Expect = 1e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| |||||||||| ||||||||| || ||| || |||||||| ||| Sbjct 375 GCGACTGTTTATCAAAAACACAGGGCTCTGCAAAATCGTAAGATGAAGTATAGGGCCTGA 434 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 | |||||||||||| |||||||||| Sbjct 435 CACCTGCCCGGTGCTGGAAGGTTAA 459 >seq40246 Length=368801 Score = 91.5 bits (100), Expect = 1e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 126782 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 126723 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 126722 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 126688 Score = 91.5 bits (100), Expect = 1e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 214423 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 214482 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 214483 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 214517 Score = 91.5 bits (100), Expect = 1e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 350396 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 350455 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 350456 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 350490 >seq19242 Length=650 Score = 91.5 bits (100), Expect = 1e-16 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| |||||| || | || |||||||||||| ||| Sbjct 538 GCGACTGTTTAGCAAAAACACAGGGCTCTGCGAAGCAGCAATGCGACGTATAGGGTCTGA 597 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||||| ||||||||| Sbjct 598 CGCCTGCCCGGTGCCTGAAGGTTAA 622 >seq4392 Length=923 Score = 91.5 bits (100), Expect = 1e-16 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 || |||||||| |||||||||| |||||| || || || || ||||||||| ||| Sbjct 662 GCAACTGTTTAACAAAAACACAGGGCTCTGCTAAGCCGTGAGGCGAAGTATAGGGTCTGA 603 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||||||||||||||| Sbjct 602 CGCCTGCCCGGTGCCGGAAGGTTAA 578 >seq187 Length=45274173 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 |||||||| |||||||| ||||||||||| ||||||||| ||| ||||| || Sbjct 762311 GGTCGAAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAAGTCTCCGCAAAGTCGT 762252 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 762251 AAGACCATGTATGGGGACTGACGCCTGCCCAGTGCCGGAAGGTCAA 762206 >seq12686 Length=740 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 || || ||| |||||||| ||||||||||| ||||||||||| | ||| || | Sbjct 92 GGCCGCAGAGACCAGGCCCAAGCGACTGTTTACTAAAAACACAGGTCCGTGCGAAGTTGT 151 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| || ||||| || |||| |||||||||||| |||||||||| Sbjct 152 AAGACGATGTATACGGACTGACTCCTGCCCGGTGCTGGAAGGTTAA 197 >seq331 Length=107979 Score = 78.8 bits (86), Expect = 9e-13 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 |||||||| |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 52220 GGTCGAAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 52279 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCC 142 ||| | |||| ||| |||||||||||| ||||| Sbjct 52280 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCC 52315 >seq96 Length=52461754 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||| |||| |||||||| |||||||||| ||||| |||| ||| ||||| || Sbjct 288668 GGTTGAAGTGACCAGGCCCAGACGACTGTTTACCAAAAATACAGGTCTCCGCAAAGTCGT 288609 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | ||||||| |||||||||||| |||||||||||||| Sbjct 288608 AAGACCATATATAGGGGCTGACGCCTGCCCAATGCCGGAAGGTTAA 288563 >seq6263 Length=875 Score = 77.0 bits (84), Expect = 3e-12 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 71 ACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGC 130 |||||||| ||||||| || | ||||||| |||||| ||||||||| | ||| | Sbjct 761 ACTGTTTAGCAAAAACATAGGGCCCTGCAAATTCGAAAGAAGACGTATAGAGCCTGATAC 820 Query 131 CTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||| |||||||||| Sbjct 821 CTGCCCGGTGCTGGAAGGTTAA 842 >seq343 Length=84052 Score = 75.2 bits (82), Expect = 1e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||||| ||||||||||| |||||||||| ||| ||||| || ||| | || Sbjct 82989 ACCAGGCCCGGGCGACTGTTTACAAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGT 82930 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||| ||||||||| || |||| ||||||| || Sbjct 82929 ATGGGGGCTGACGCCTGTCCAGTGCTGGAAGGTCAA 82894 >seq116 Length=461298 Score = 73.4 bits (80), Expect = 4e-11 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| ||| ||||| | ||| | |||| ||| ||| Sbjct 199293 GCGACTGTTTACTAAAAACACAGGTCTCCGCAAAGTCCTAAGACCATGTATGGGGGTTGA 199352 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||| |||||||||||| || Sbjct 199353 CGCCTGCCTAGTGCCGGAAGGTCAA 199377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476614103726