Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq40083 123 2e-26
seq2729 109 5e-22
seq13052 105 6e-21
seq27127 104 2e-20
seq15983 104 2e-20
seq5225 104 2e-20
seq31559 102 8e-20
seq28795 95.1 1e-17
seq6614 95.1 1e-17
seq40246 91.5 1e-16
seq19242 91.5 1e-16
seq4392 91.5 1e-16
seq187 87.8 2e-15
seq12686 84.2 2e-14
seq331 78.8 9e-13
seq96 78.8 9e-13
seq6263 77.0 3e-12
seq343 75.2 1e-11
seq116 73.4 4e-11
>seq40083
Length=1008
Score = 123 bits (136), Expect = 2e-26
Identities = 97/116 (84%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 37 AGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCT 96
||| || ||||||| ||| | ||| | ||||||||||| ||||||||||||||||
Sbjct 382 AGCACAGTCCGGTCGCAGAGAAGAGGGAGAAGCGACTGTTTAACAAAAACACAGCACTCT 323
Query 97 GCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||||| || ||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 322 GCAAAATCGTAAGATGACGTATAGGGTGTGACGCCTGCCCGGTGCTGGAAGGTTAA 267
>seq2729
Length=971
Score = 109 bits (120), Expect = 5e-22
Identities = 77/88 (88%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
||||||||||| ||||||||||| |||||| || | | || | |||||||||||| |||
Sbjct 904 GCGACTGTTTACTAAAAACACAGGGCTCTGCGAAGATGCAAATCGACGTATAGGGTCTGA 845
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAATTG 155
||||||||||||||||||||||||| ||
Sbjct 844 CGCCTGCCCGGTGCCGGAAGGTTAAATG 817
>seq13052
Length=729
Score = 105 bits (116), Expect = 6e-21
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
|||||||||||| |||||||||| ||||||| |||||| ||||||| |||||| || |||
Sbjct 589 GCGACTGTTTATCAAAAACACAGGACTCTGCTAACACGCAAGTGGATGTATAGAGTCTGA 530
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
||||||||||||| || |||||||
Sbjct 529 CGCCTGCCCGGTG-TGGTAGGTTAA 506
>seq27127
Length=557
Score = 104 bits (114), Expect = 2e-20
Identities = 74/85 (87%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
|||||||||||| |||||||||| ||||||| ||| || ||| |||||||||| || |||
Sbjct 241 GCGACTGTTTATCAAAAACACAGGACTCTGCCAACTCGCAAGAGGACGTATAGAGTCTGA 300
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
||||||| ||||| ||| |||||||
Sbjct 301 CGCCTGCTCGGTGTCGGTAGGTTAA 325
>seq15983
Length=684
Score = 104 bits (114), Expect = 2e-20
Identities = 78/92 (85%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 61 GGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAG 120
||| | || ||||||||| ||||||||||| ||||||| || || ||| |||||||||
Sbjct 550 GGCGGTTGTGACTGTTTACTAAAAACACAGGACTCTGCGAAGTCGTAAGACGACGTATAG 609
Query 121 GGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| ||| ||||||||||||| ||||||||||
Sbjct 610 GGTCTGATGCCTGCCCGGTGCTGGAAGGTTAA 641
>seq5225
Length=903
Score = 104 bits (114), Expect = 2e-20
Identities = 74/85 (87%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
||||||||||| |||||||||| ||||||| || |||||| || ||||||||| |||
Sbjct 296 GCGACTGTTTAGCAAAAACACAGGACTCTGCCAAATCGAAAGATGAAGTATAGGGTCTGA 355
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
| |||||||||||||||||||||||
Sbjct 356 CACCTGCCCGGTGCCGGAAGGTTAA 380
>seq31559
Length=506
Score = 102 bits (112), Expect = 8e-20
Identities = 80/96 (83%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116
|||||| | || |||||||| |||||||||| |||||| || || ||| |||||
Sbjct 333 ACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAAATCGTAAGATGACGT 274
Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||||||| ||||||||||||||||||||||||||||
Sbjct 273 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 238
>seq28795
Length=541
Score = 95.1 bits (104), Expect = 1e-17
Identities = 72/85 (85%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
|||||||||||| |||||||||| ||||||| ||| || ||| ||| |||||| | |||
Sbjct 308 GCGACTGTTTATCAAAAACACAGGACTCTGCGAACTCGTAAGAGGATGTATAGAGACTGA 249
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
||||||| ||||||||| | |||||
Sbjct 248 CGCCTGCTCGGTGCCGGTAAGTTAA 224
>seq6614
Length=860
Score = 95.1 bits (104), Expect = 1e-17
Identities = 72/85 (85%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
|||||||||||| |||||||||| ||||||||| || ||| || |||||||| |||
Sbjct 375 GCGACTGTTTATCAAAAACACAGGGCTCTGCAAAATCGTAAGATGAAGTATAGGGCCTGA 434
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
| |||||||||||| ||||||||||
Sbjct 435 CACCTGCCCGGTGCTGGAAGGTTAA 459
>seq40246
Length=368801
Score = 91.5 bits (100), Expect = 1e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 126782 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 126723
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 126722 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 126688
Score = 91.5 bits (100), Expect = 1e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 214423 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 214482
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 214483 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 214517
Score = 91.5 bits (100), Expect = 1e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 350396 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 350455
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 350456 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 350490
>seq19242
Length=650
Score = 91.5 bits (100), Expect = 1e-16
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
||||||||||| |||||||||| |||||| || | || |||||||||||| |||
Sbjct 538 GCGACTGTTTAGCAAAAACACAGGGCTCTGCGAAGCAGCAATGCGACGTATAGGGTCTGA 597
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
||||||||||||||| |||||||||
Sbjct 598 CGCCTGCCCGGTGCCTGAAGGTTAA 622
>seq4392
Length=923
Score = 91.5 bits (100), Expect = 1e-16
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
|| |||||||| |||||||||| |||||| || || || || ||||||||| |||
Sbjct 662 GCAACTGTTTAACAAAAACACAGGGCTCTGCTAAGCCGTGAGGCGAAGTATAGGGTCTGA 603
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||||||||||||||||||||||
Sbjct 602 CGCCTGCCCGGTGCCGGAAGGTTAA 578
>seq187
Length=45274173
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
|||||||| |||||||| ||||||||||| ||||||||| ||| ||||| ||
Sbjct 762311 GGTCGAAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAAGTCTCCGCAAAGTCGT 762252
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 762251 AAGACCATGTATGGGGACTGACGCCTGCCCAGTGCCGGAAGGTCAA 762206
>seq12686
Length=740
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
|| || ||| |||||||| ||||||||||| ||||||||||| | ||| || |
Sbjct 92 GGCCGCAGAGACCAGGCCCAAGCGACTGTTTACTAAAAACACAGGTCCGTGCGAAGTTGT 151
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| || ||||| || |||| |||||||||||| ||||||||||
Sbjct 152 AAGACGATGTATACGGACTGACTCCTGCCCGGTGCTGGAAGGTTAA 197
>seq331
Length=107979
Score = 78.8 bits (86), Expect = 9e-13
Identities = 75/96 (78%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
|||||||| |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 52220 GGTCGAAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 52279
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCC 142
||| | |||| ||| |||||||||||| |||||
Sbjct 52280 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCC 52315
>seq96
Length=52461754
Score = 78.8 bits (86), Expect = 9e-13
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||| |||| |||||||| |||||||||| ||||| |||| ||| ||||| ||
Sbjct 288668 GGTTGAAGTGACCAGGCCCAGACGACTGTTTACCAAAAATACAGGTCTCCGCAAAGTCGT 288609
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | ||||||| |||||||||||| ||||||||||||||
Sbjct 288608 AAGACCATATATAGGGGCTGACGCCTGCCCAATGCCGGAAGGTTAA 288563
>seq6263
Length=875
Score = 77.0 bits (84), Expect = 3e-12
Identities = 66/82 (80%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 71 ACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGC 130
|||||||| ||||||| || | ||||||| |||||| ||||||||| | ||| |
Sbjct 761 ACTGTTTAGCAAAAACATAGGGCCCTGCAAATTCGAAAGAAGACGTATAGAGCCTGATAC 820
Query 131 CTGCCCGGTGCCGGAAGGTTAA 152
||||||||||| ||||||||||
Sbjct 821 CTGCCCGGTGCTGGAAGGTTAA 842
>seq343
Length=84052
Score = 75.2 bits (82), Expect = 1e-11
Identities = 74/96 (77%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116
|||||||| ||||||||||| |||||||||| ||| ||||| || ||| | ||
Sbjct 82989 ACCAGGCCCGGGCGACTGTTTACAAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGT 82930
Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|| ||| ||||||||| || |||| ||||||| ||
Sbjct 82929 ATGGGGGCTGACGCCTGTCCAGTGCTGGAAGGTCAA 82894
>seq116
Length=461298
Score = 73.4 bits (80), Expect = 4e-11
Identities = 67/85 (79%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
||||||||||| ||||||||||| ||| ||||| | ||| | |||| ||| |||
Sbjct 199293 GCGACTGTTTACTAAAAACACAGGTCTCCGCAAAGTCCTAAGACCATGTATGGGGGTTGA 199352
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||||| |||||||||||| ||
Sbjct 199353 CGCCTGCCTAGTGCCGGAAGGTCAA 199377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476614103726
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |