Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq103 307 2e-81
seq147 298 9e-79
seq57 298 9e-79
seq22 289 5e-76
seq1036 269 4e-70
seq808 248 1e-63
seq344 223 6e-56
seq43 192 9e-47
seq1 127 3e-27
>seq103
Length=1049538
Score = 307 bits (340), Expect = 2e-81
Identities = 225/259 (87%), Gaps = 2/259 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762275 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 762216
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | | || ||| | |||||||||||||||||| |||
Sbjct 762215 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 762156
Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| || | || || |||| |||||||| | ||||||||||||||| |||||||
Sbjct 762155 GCGAAGGACTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 762096
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762095 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 762036
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||| ||||||
Sbjct 762035 AAAGAGCTCTCAGTCTGTC 762017
>seq147
Length=783512
Score = 298 bits (330), Expect = 9e-79
Identities = 223/259 (86%), Gaps = 2/259 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 699734 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATAACAGA 699675
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | | || ||| | |||||||||||||||||| |||
Sbjct 699674 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 699615
Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| || | || || |||| |||||||| | ||||||||||||||| |||||||
Sbjct 699614 GCGAAGGACTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 699555
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 699554 AACCAGACAAATCGCTCCACCAACTAAGAACGACCATGCACCACCACCCATAGAATCAAG 699495
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||| ||||||
Sbjct 699494 AAAGAGCTCTCAGTCTGTC 699476
>seq57
Length=33024243
Score = 298 bits (330), Expect = 9e-79
Identities = 223/259 (86%), Gaps = 2/259 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 27222375 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATAACAGA 27222316
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | | || ||| | |||||||||||||||||| |||
Sbjct 27222315 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 27222256
Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| || | || || |||| |||||||| | ||||||||||||||| |||||||
Sbjct 27222255 GCGAAGGACTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 27222196
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 27222195 AACCAGACAAATCGCTCCACCAACTAAGAACGACCATGCACCACCACCCATAGAATCAAG 27222136
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||| ||||||
Sbjct 27222135 AAAGAGCTCTCAGTCTGTC 27222117
Score = 188 bits (208), Expect = 1e-45
Identities = 144/168 (86%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 93 AAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAG-TCGATGGGGCTATTTAGC 150
||| | |||||||||||||||||| ||| | || | || || |||| |||||
Sbjct 8400729 AAGGCCATAGTCCCTCTAAGAAGCTAGCTGCGAAGGACTACCTCCGCATAGCTAGTTAGC 8400670
Query 151 AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAAC 210
||| | ||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 8400669 AGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAAC 8400610
Query 211 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 8400609 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 8400562
Score = 77.0 bits (84), Expect = 5e-12
Identities = 50/55 (91%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 204 TAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||||||||||||||| | ||||||||||| | ||||||
Sbjct 19470514 TAAGAACGACCATGCACCACCACCCATAGAATGAGGAAAGAGCTATTAGTCTGTC 19470568
>seq22
Length=40393389
Score = 289 bits (320), Expect = 5e-76
Identities = 221/259 (85%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 33416249 ACTCGTTGAATACATTAGTGTAGCGTGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 33416308
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||| | | | | || ||| | |||||||||||||||||| |||
Sbjct 33416309 CCTGTTATTGCCTCAAACGTTCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 33416368
Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| || | || || | |||| |||||||| | ||||||||||||||| |||||||
Sbjct 33416369 GCGAAGGACTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 33416428
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 33416429 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 33416488
Query 240 AAAGAGCTATCAATCTGTC 258
|||| ||| ||| ||||||
Sbjct 33416489 AAAGTGCTCTCAGTCTGTC 33416507
>seq1036
Length=7046
Score = 269 bits (298), Expect = 4e-70
Identities = 213/251 (85%), Gaps = 6/251 (2%)
Strand=Plus/Plus
Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2585 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 2644
Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT- 130
| |||| || | || || | |||| | |||||||||||||| | | | | ||
Sbjct 2645 C-TCAATCT-CGTGTGACTAAACGCCACTTGTCCCTCTAAGAAGTTAACGCCGACAGATT 2702
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
|| | || || |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2703 AGACAATCGGCGAACTATTTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 2762
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2763 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCT 2822
Query 248 ATCAATCTGTC 258
||||||||||
Sbjct 2823 CTCAATCTGTC 2833
>seq808
Length=9131
Score = 248 bits (274), Expect = 1e-63
Identities = 206/250 (82%), Gaps = 9/250 (4%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6172 CATTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 6113
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAA----CCATAG 132
||||||||| | ||| | | ||||||||||||||||| | | || ||
Sbjct 6112 AACTTCCATCGACTGCACATCGATAGTCCCTCTAAGAAGTTGGAACGCGTTGGCCCGGAG 6053
Query 133 TCGATGGGGCTATTT----AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188
| | || | | | |||||| | ||||||||||||||| ||||||||||||||||
Sbjct 6052 GCAAACGGCCGACTACAAAAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 5993
Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 5992 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCGAAGTGATCAAGAAAGAGCT- 5934
Query 249 TCAATCTGTC 258
||||||||||
Sbjct 5933 TCAATCTGTC 5924
>seq344
Length=88605
Score = 223 bits (246), Expect = 6e-56
Identities = 198/245 (81%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
|| |||||| | || ||||||| | |||||||||||||||||| || ||||||||||||
Sbjct 76746 TCCGTGTAGTGTGCAAGCGGCCCTGGACATCTAAGGGCATCACAAACTTGTTATTGCCTC 76805
Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAG-T 133
||| |||| | || |||| | |||| ||||||||||||| | | || || | || |
Sbjct 76806 AAAATTCCGTGACCTAGAAGGCCATAGCCCCTCTAAGAAGCTATCTACGAAGGACTACCT 76865
Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193
| |||| |||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 76866 CCGCATAGCTAGTTAGCAGGTTGAGGTCTCGTTCATTAACGGAATTAACCAGACAAATCG 76925
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
||||| ||| ||||||| |||||||||||||||||||||||||||||| |||| | | |
Sbjct 76926 CTCCATTAACCAAGAACGACCATGCACCACCACCCATAGAATCAAGAAAAAGCTCTTAGT 76985
Query 254 CTGTC 258
|| ||
Sbjct 76986 CTATC 76990
>seq43
Length=26577699
Score = 192 bits (212), Expect = 9e-47
Identities = 178/222 (80%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98
|||||| ||||||| || | | ||||||||||||||||||||| ||| | || || |
Sbjct 21126163 AGAACACCTAAGGGTATTATATACCTGTTATTGCCTCAAACTTTCATGGCCTAACAGGCC 21126222
Query 99 ATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTA 156
|||||||||||||||||| ||| | || | || || ||| |||| ||| ||
Sbjct 21126223 ATAGTCCCTCTAAGAAGCTAGCTGCGAAGGACTACCTCCTCATAACTAGTTAGTAGGCTA 21126282
Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216
||||||||||||||| || |||| || ||||||||| |||||||||||||||| |||||
Sbjct 21126283 AGGTCTCGTTCGTTAACG-AATTCACTAGACAAATCTATCCACCAACTAAGAACAGCCAT 21126341
Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||| ||||| ||||||||||||||||||| | | ||||||
Sbjct 21126342 GCACCGCCACCAATAGAATCAAGAAAGAGCTCTTAGTCTGTC 21126383
>seq1
Length=34941034
Score = 127 bits (140), Expect = 3e-27
Identities = 165/226 (73%), Gaps = 13/226 (6%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCC----AGAACATCTAAGGGCATCACAGACCTGTTATTG 71
||||||||| || |||||||| | | | ||||||||| ||||| |||||| ||
Sbjct 5531410 TCAGTGTAGAGCTCGTGCGGCGCGCCTAAATGATCTAAGGGAATCACGGACCTGCACCTG 5531351
Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG---CCACCAACC 128
|||||||||| | | || ||| | |||||||||||||||||| || | || ||
Sbjct 5531350 CCTCAAACTTGCGTGACCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGATGCGACGGACT 5531291
Query 129 AT----AG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC 182
| || || | |||| || |||| | |||| ||||| |||| ||||||||||
Sbjct 5531290 ACCTCCAGGCTCCACATAGCTAGTTGACAGGGTGAGGTATCGTTAGTTAACGGAATTAAC 5531231
Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228
||||||||| || |||||||||||||| |||||| |||||||
Sbjct 5531230 CAGACAAATAGCTTCACCAACTAAGAACAACCATGCTTTACCACCC 5531185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796489341126
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