Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq103 307 2e-81 seq147 298 9e-79 seq57 298 9e-79 seq22 289 5e-76 seq1036 269 4e-70 seq808 248 1e-63 seq344 223 6e-56 seq43 192 9e-47 seq1 127 3e-27 >seq103 Length=1049538 Score = 307 bits (340), Expect = 2e-81 Identities = 225/259 (87%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 762275 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 762216 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 762215 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 762156 Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | || | || || |||| |||||||| | ||||||||||||||| ||||||| Sbjct 762155 GCGAAGGACTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 762096 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 762095 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 762036 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 762035 AAAGAGCTCTCAGTCTGTC 762017 >seq147 Length=783512 Score = 298 bits (330), Expect = 9e-79 Identities = 223/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 699734 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATAACAGA 699675 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 699674 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 699615 Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | || | || || |||| |||||||| | ||||||||||||||| ||||||| Sbjct 699614 GCGAAGGACTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 699555 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 699554 AACCAGACAAATCGCTCCACCAACTAAGAACGACCATGCACCACCACCCATAGAATCAAG 699495 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 699494 AAAGAGCTCTCAGTCTGTC 699476 >seq57 Length=33024243 Score = 298 bits (330), Expect = 9e-79 Identities = 223/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 27222375 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATAACAGA 27222316 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 27222315 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 27222256 Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | || | || || |||| |||||||| | ||||||||||||||| ||||||| Sbjct 27222255 GCGAAGGACTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 27222196 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 27222195 AACCAGACAAATCGCTCCACCAACTAAGAACGACCATGCACCACCACCCATAGAATCAAG 27222136 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 27222135 AAAGAGCTCTCAGTCTGTC 27222117 Score = 188 bits (208), Expect = 1e-45 Identities = 144/168 (86%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 93 AAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAG-TCGATGGGGCTATTTAGC 150 ||| | |||||||||||||||||| ||| | || | || || |||| ||||| Sbjct 8400729 AAGGCCATAGTCCCTCTAAGAAGCTAGCTGCGAAGGACTACCTCCGCATAGCTAGTTAGC 8400670 Query 151 AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAAC 210 ||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 8400669 AGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAAC 8400610 Query 211 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 8400609 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 8400562 Score = 77.0 bits (84), Expect = 5e-12 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 204 TAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||||||||||||||||||| | ||||||||||| | |||||| Sbjct 19470514 TAAGAACGACCATGCACCACCACCCATAGAATGAGGAAAGAGCTATTAGTCTGTC 19470568 >seq22 Length=40393389 Score = 289 bits (320), Expect = 5e-76 Identities = 221/259 (85%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 33416249 ACTCGTTGAATACATTAGTGTAGCGTGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 33416308 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||| | | | | || ||| | |||||||||||||||||| ||| Sbjct 33416309 CCTGTTATTGCCTCAAACGTTCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 33416368 Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | || | || || | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 33416369 GCGAAGGACTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 33416428 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 33416429 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 33416488 Query 240 AAAGAGCTATCAATCTGTC 258 |||| ||| ||| |||||| Sbjct 33416489 AAAGTGCTCTCAGTCTGTC 33416507 >seq1036 Length=7046 Score = 269 bits (298), Expect = 4e-70 Identities = 213/251 (85%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2585 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 2644 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT- 130 | |||| || | || || | |||| | |||||||||||||| | | | | || Sbjct 2645 C-TCAATCT-CGTGTGACTAAACGCCACTTGTCCCTCTAAGAAGTTAACGCCGACAGATT 2702 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | || || |||||||||||| || ||||||||||||||||||||||||||||| Sbjct 2703 AGACAATCGGCGAACTATTTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 2762 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2763 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCT 2822 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 2823 CTCAATCTGTC 2833 >seq808 Length=9131 Score = 248 bits (274), Expect = 1e-63 Identities = 206/250 (82%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6172 CATTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 6113 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAA----CCATAG 132 ||||||||| | ||| | | ||||||||||||||||| | | || || Sbjct 6112 AACTTCCATCGACTGCACATCGATAGTCCCTCTAAGAAGTTGGAACGCGTTGGCCCGGAG 6053 Query 133 TCGATGGGGCTATTT----AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | | || | | | |||||| | ||||||||||||||| |||||||||||||||| Sbjct 6052 GCAAACGGCCGACTACAAAAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 5993 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 5992 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCGAAGTGATCAAGAAAGAGCT- 5934 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 5933 TCAATCTGTC 5924 >seq344 Length=88605 Score = 223 bits (246), Expect = 6e-56 Identities = 198/245 (81%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 || |||||| | || ||||||| | |||||||||||||||||| || |||||||||||| Sbjct 76746 TCCGTGTAGTGTGCAAGCGGCCCTGGACATCTAAGGGCATCACAAACTTGTTATTGCCTC 76805 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAG-T 133 ||| |||| | || |||| | |||| ||||||||||||| | | || || | || | Sbjct 76806 AAAATTCCGTGACCTAGAAGGCCATAGCCCCTCTAAGAAGCTATCTACGAAGGACTACCT 76865 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | |||| |||||||||| ||||||||||| ||| |||||||||||||||||||| Sbjct 76866 CCGCATAGCTAGTTAGCAGGTTGAGGTCTCGTTCATTAACGGAATTAACCAGACAAATCG 76925 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||| ||| ||||||| |||||||||||||||||||||||||||||| |||| | | | Sbjct 76926 CTCCATTAACCAAGAACGACCATGCACCACCACCCATAGAATCAAGAAAAAGCTCTTAGT 76985 Query 254 CTGTC 258 || || Sbjct 76986 CTATC 76990 >seq43 Length=26577699 Score = 192 bits (212), Expect = 9e-47 Identities = 178/222 (80%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98 |||||| ||||||| || | | ||||||||||||||||||||| ||| | || || | Sbjct 21126163 AGAACACCTAAGGGTATTATATACCTGTTATTGCCTCAAACTTTCATGGCCTAACAGGCC 21126222 Query 99 ATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTA 156 |||||||||||||||||| ||| | || | || || ||| |||| ||| || Sbjct 21126223 ATAGTCCCTCTAAGAAGCTAGCTGCGAAGGACTACCTCCTCATAACTAGTTAGTAGGCTA 21126282 Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 ||||||||||||||| || |||| || ||||||||| |||||||||||||||| ||||| Sbjct 21126283 AGGTCTCGTTCGTTAACG-AATTCACTAGACAAATCTATCCACCAACTAAGAACAGCCAT 21126341 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| ||||| ||||||||||||||||||| | | |||||| Sbjct 21126342 GCACCGCCACCAATAGAATCAAGAAAGAGCTCTTAGTCTGTC 21126383 >seq1 Length=34941034 Score = 127 bits (140), Expect = 3e-27 Identities = 165/226 (73%), Gaps = 13/226 (6%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCC----AGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||||||||| || |||||||| | | | ||||||||| ||||| |||||| || Sbjct 5531410 TCAGTGTAGAGCTCGTGCGGCGCGCCTAAATGATCTAAGGGAATCACGGACCTGCACCTG 5531351 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG---CCACCAACC 128 |||||||||| | | || ||| | |||||||||||||||||| || | || || Sbjct 5531350 CCTCAAACTTGCGTGACCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGATGCGACGGACT 5531291 Query 129 AT----AG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC 182 | || || | |||| || |||| | |||| ||||| |||| |||||||||| Sbjct 5531290 ACCTCCAGGCTCCACATAGCTAGTTGACAGGGTGAGGTATCGTTAGTTAACGGAATTAAC 5531231 Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 ||||||||| || |||||||||||||| |||||| ||||||| Sbjct 5531230 CAGACAAATAGCTTCACCAACTAAGAACAACCATGCTTTACCACCC 5531185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796489341126