Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq14921 419 5e-115 seq34962 345 9e-93 seq24564 262 8e-68 seq32520 226 6e-57 seq40246 205 2e-50 seq20801 176 1e-41 seq34591 172 1e-40 seq4536 129 1e-27 seq22 125 2e-26 seq127 114 3e-23 seq14099 113 1e-22 seq39058 107 4e-21 seq187 91.5 3e-16 seq145 89.7 1e-15 seq11641 87.8 4e-15 seq38187 77.0 7e-12 >seq14921 Length=713 Score = 419 bits (464), Expect = 5e-115 Identities = 303/347 (87%), Gaps = 5/347 (1%) Strand=Plus/Plus Query 14 AGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATT 73 || ||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 1 AGGCCTTCTT-CACCCACGCGGCAT-GGCTGGATCAGGCTTGCGCCCATTGTCCAATATT 58 Query 74 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 59 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCAT 118 Query 134 CCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 ||||||||||||| |||||||||||||||||||| ||||||||| | ||||||||||||| Sbjct 119 CCTCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCATTACCCCGCCAACTAGCTAAT 178 Query 194 CCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGAC 253 ||||| | ||||||||| || |||| ||| | | ||||| |||||| |||||||| | Sbjct 179 CCGACATCGGCTCATCTTATCGCGCGAGGTCTTGCGATCCCCCGCTTTCACCCGTAGGTC 238 Query 254 GTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGG 313 ||||||||||||||||| |||||| |||||||||||||| | ||||||||||| | | Sbjct 239 GTATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGATAAGGCAGATTCCGATG 298 Query 314 CATTACTCACCCGTCCGCCGCTCTCAA---GAGAAGCAAGCTTCTCT 357 ||| |||||||||||||| ||| | | || |||||||| |||| Sbjct 299 TATTCCTCACCCGTCCGCCACTCGCCACCCAAGGAGCAAGCTCCTCT 345 >seq34962 Length=1006 Score = 345 bits (382), Expect = 9e-93 Identities = 279/335 (83%), Gaps = 2/335 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| ||||||| | |||||||||||| ||||||||||||| |||||| Sbjct 590 TTTACAACCCGAAGGCCTTCTTCCTG-CACGCGGCATTG-CTGGATCAGGCTTGCGCCCA 647 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 648 TTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 707 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| || |||||||||||||| ||| |||||||| ||||||||||| ||||| ||| Sbjct 708 GTGGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTGAGCCTTTACCCCAC 767 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||||| |||||| ||| | ||| || || |||| ||||| | ||||||| ||||| Sbjct 768 CAACTACCTAATCTGACATCGGCCGCTCCAATCGCGCGAGGCCTTACGGTCCCCCGCTTT 827 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | || ||| ||||||||||||||||| |||| ||||||||||||| || || Sbjct 828 CATCCATAGATCGTATGCGGTATTAGCGCAGCTTTCGCTGCGTTATCCCCCACGACTGGG 887 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || |||| | ||||||||||||||| |||| ||| Sbjct 888 CACGTTCCGATGCATTACTCACCCGTTCGCCACTC 922 >seq24564 Length=585 Score = 262 bits (290), Expect = 8e-68 Identities = 185/209 (89%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 379 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 436 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 437 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 496 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||||||||||||||| ||| ||||| || Sbjct 497 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCA 556 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATC 209 ||||||||||||||| || |||||||| Sbjct 557 CCAACTAGCTAATCCAACGCGGGCTCATC 585 >seq32520 Length=505 Score = 226 bits (250), Expect = 6e-57 Identities = 141/149 (95%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| ||| |||||||||| ||||||||||||||| ||||| Sbjct 359 CTTTACAACCCGAAGGCCTTCTT-CACCCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 416 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 476 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTA 149 |||| ||||||||||||||||||||| || Sbjct 477 TGTGGCTGATCATCCTCTCAGACCAGCTA 505 >seq40246 Length=368801 Score = 205 bits (226), Expect = 2e-50 Identities = 168/202 (83%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||||| |||| ||||||| |||||||||||||||||||| |||||| Sbjct 311039 CCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCC 311096 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| ||||| |||||| || |||||||||||| |||||||| |||||||||| Sbjct 311097 CACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCG 311156 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196 ||||||| || | ||| | | |||||| |||| |||||| |||||||| ||||| | Sbjct 311157 AAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACT 311216 Query 197 ACCTAGGCTCATCTGATAGCGC 218 || ||||||||| | ||||| Sbjct 311217 ACGCAGGCTCATCAAACAGCGC 311238 >seq20801 Length=610 Score = 176 bits (194), Expect = 1e-41 Identities = 168/210 (80%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 2 TTTACAATCC-GAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||| || || | || |||| | |||||||| | |||||| |||| ||| || || Sbjct 270 TTTACAACCCAGAGGGCCGTCTTCCTG-CACGCGGCGT-GGCTGGGTCAGACTT-CGTCC 214 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||| Sbjct 213 ATTGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTATCTCAGTGCCAG 154 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| |||||||||| | || |||||| | ||||||||||| ||||||| Sbjct 153 TGTGGGGGATTCTCCTCTCAGAGCCCCTAAAGATCGTAGACTTGGTGAGCCGTTACCTCG 94 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCT 210 ||||||| |||||| || | || ||||| Sbjct 93 CCAACTATCTAATCTTACGCATGCCCATCT 64 >seq34591 Length=1716 Score = 172 bits (190), Expect = 1e-40 Identities = 233/318 (73%), Gaps = 19/318 (6%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 |||||| | || ||||||| ||| || ||||||||||||||||||| || |||||| Sbjct 980 CCTTCTACCTCA-ACGCGGCGTTG-CTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCC 1037 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||| ||||||||| ||||||||| | |||||||||||| |||||| ||||| ||||| Sbjct 1038 CACTACTGCCTCCCATAGGAGTCTTGGCCGTGTCTCAGTCATAGTGTGGCTGATTATCCT 1097 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196 || |||||| ||| ||| |||||||||| ||||| | |||||| || ||||||||| | Sbjct 1098 CTGGGACCAGCTACTAATCATCGCCTTGGTAAGCCACTGCCTCACTAAGTAGCTAATCAG 1157 Query 197 ACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTA 256 | | | | || | | ||| || ||| | ||||| || | || Sbjct 1158 A--TGCGAGCCCCTCCTCGAGCAGATTCC-----TCCTTTTGCTTCTC----AG--CCTA 1204 Query 257 TGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGC 314 | ||||||||| |||||||| ||| | ||| || ||| ||||| ||| || || Sbjct 1205 CGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGC 1262 Query 315 ATTACTCACCCGTCCGCC 332 ||||||||||||||||| Sbjct 1263 GTTACTCACCCGTCCGCC 1280 >seq4536 Length=917 Score = 129 bits (142), Expect = 1e-27 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||| | |||| | ||||| | | ||||| || | | | | |||||||||||||| Sbjct 281 CTTTACGACCCGAGGGCCTTCAT-CGTTCACGCAGCGTCGCATCG-TCAGGCTTTCGCCC 224 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| | |||| | ||||| ||||||||||||||||||| | |||||||||| |||| Sbjct 223 ATTGCGGATGATTCTCGACTGCAGCCTCCCGTAGGAGTCTGGGCAGTGTCTCAGTCCCAG 164 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 ||| | ||| |||||| || || || | |||||||||||||||||||||| Sbjct 163 TGTTGGCGGTCAATCTCTCAACCCGCCTAGACGTCTTAGCCTTGGTGAGCCATTACCTCA 104 Query 181 CCAACTAGCTAAT 193 ||||| |||| || Sbjct 103 CCAACAAGCTGAT 91 >seq22 Length=40393389 Score = 125 bits (138), Expect = 2e-26 Identities = 86/96 (90%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 18492665 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 18492723 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124 |||||||||||||| |||||||||||| |||||||| Sbjct 18492724 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTG 18492759 Score = 80.6 bits (88), Expect = 6e-13 Identities = 72/89 (81%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 45 GATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGAC 104 |||| |||||| ||||||||||||| ||||||||||||| || | | ||||| ||| Sbjct 1295858 GATCGGGCTTTTGCCCATTGTCCAAGATTCCCCACTGCTACC-CTTATGAGAGTCCAGAC 1295916 Query 105 CGTGTCTCAGTTCCAGTGTGACTGATCAT 133 |||| |||||| | |||||| ||||| || Sbjct 1295917 CGTGCCTCAGTCCAAGTGTGGCTGATAAT 1295945 >seq127 Length=60962716 Score = 114 bits (126), Expect = 3e-23 Identities = 86/100 (86%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||| | |||| |||||| |||||||||||||||||||| ||||||||||||| Sbjct 15335486 TCACTCACGAGATATTGT-TGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCT 15335428 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 123 ||| ||||| |||||| || ||||||||||| ||||||| Sbjct 15335427 GCCCCCCGTGGGAGTCCGGGTCGTGTCTCAGTCCCAGTGT 15335388 >seq14099 Length=708 Score = 113 bits (124), Expect = 1e-22 Identities = 133/184 (72%), Gaps = 16/184 (9%) Strand=Plus/Minus Query 152 GATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTG 211 ||||||||||||||| ||| ||||| |||||||||||||||| ||| ||| | ||| Sbjct 708 GATCGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAATCAGACGCGGGCCCCTCTC 649 Query 212 ATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTC 271 || ||| || ||||| |||| ||| | || |||| |||||||| Sbjct 648 ATGGCGTAAA----------------CTTTCCCCCGAAGGGCACATCCGGTGTTAGCGTC 605 Query 272 CGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGC 331 ||||||| |||||||| || || | |||||| |||| | | |||||||||||| ||| Sbjct 604 CGTTTCCAAACGTTATTCCGAACCATAAGGCAGGTTCCCACGTGTTACTCACCCGTGCGC 545 Query 332 CGCT 335 | || Sbjct 544 CACT 541 >seq39058 Length=1081 Score = 107 bits (118), Expect = 4e-21 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || ||||||||| |||||| ||||||||| || Sbjct 1081 TGTGGCTGATCATCCTCTCAGACCAGCTAAGGATCGTCGGCTTGGTAGGCCATTACCCCA 1022 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATC 209 ||||||| ||||||| || |||||||| Sbjct 1021 CCAACTACCTAATCCTACGCGGGCTCATC 993 >seq187 Length=45274173 Score = 91.5 bits (100), Expect = 3e-16 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 127 TGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 ||||||||||||| |||||| ||| ||| ||| |||||| || |||||||||||||||| Sbjct 41020258 TGATCATCCTCTCGGACCAGCTACTGATTATCGACTTGGTAAGTCATTACCTCACCAACT 41020317 Query 187 AGCTAATCCGAC-CTAG 202 |||||||| ||| |||| Sbjct 41020318 AGCTAATCAGACGCTAG 41020334 >seq145 Length=44152522 Score = 89.7 bits (98), Expect = 1e-15 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||| |||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 19678111 CACGCTGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 19678169 Query 89 CCGTAGGAGTCTGG 102 |||||||||||||| Sbjct 19678170 CCGTAGGAGTCTGG 19678183 >seq11641 Length=770 Score = 87.8 bits (96), Expect = 4e-15 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 126 CTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAAC 185 ||||||||||||||||||||| ||| || | ||||||||||||| ||||||| ||||| Sbjct 1 CTGATCATCCTCTCAGACCAGCTACCCGTCTTAGCCTTGGTGAGCCGTTACCTCGCCAAC 60 Query 186 TAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||| || | | ||| ||| |||||| ||||| ||||||| |||| Sbjct 61 TAGCTGATAGGCCGCGAACTCCTCTTATAGCGTCAGGCCTTGCGGTCCCCGACTTT 116 >seq38187 Length=1143 Score = 77.0 bits (84), Expect = 7e-12 Identities = 71/89 (80%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 250 GGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATT-C 308 ||||||||||||||||||| | |||||| | ||||| |||||| ||||||| || Sbjct 58 GGACGTATGCGGTATTAGCTTAGGTTTCCCCAAGTTATTCCCCACACTCAGGCAGGTTAT 117 Query 309 CTAGGCATTACTCACCCGTCCGCCGCTCT 337 | | | |||||||||||| ||||||||| Sbjct 118 CCACGTGTTACTCACCCGTGCGCCGCTCT 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071568562880