Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq14921 419 5e-115
seq34962 345 9e-93
seq24564 262 8e-68
seq32520 226 6e-57
seq40246 205 2e-50
seq20801 176 1e-41
seq34591 172 1e-40
seq4536 129 1e-27
seq22 125 2e-26
seq127 114 3e-23
seq14099 113 1e-22
seq39058 107 4e-21
seq187 91.5 3e-16
seq145 89.7 1e-15
seq11641 87.8 4e-15
seq38187 77.0 7e-12
>seq14921
Length=713
Score = 419 bits (464), Expect = 5e-115
Identities = 303/347 (87%), Gaps = 5/347 (1%)
Strand=Plus/Plus
Query 14 AGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATT 73
|| ||||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1 AGGCCTTCTT-CACCCACGCGGCAT-GGCTGGATCAGGCTTGCGCCCATTGTCCAATATT 58
Query 74 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 59 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCAT 118
Query 134 CCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193
||||||||||||| |||||||||||||||||||| ||||||||| | |||||||||||||
Sbjct 119 CCTCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCATTACCCCGCCAACTAGCTAAT 178
Query 194 CCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGAC 253
||||| | ||||||||| || |||| ||| | | ||||| |||||| |||||||| |
Sbjct 179 CCGACATCGGCTCATCTTATCGCGCGAGGTCTTGCGATCCCCCGCTTTCACCCGTAGGTC 238
Query 254 GTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGG 313
||||||||||||||||| |||||| |||||||||||||| | ||||||||||| | |
Sbjct 239 GTATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGATAAGGCAGATTCCGATG 298
Query 314 CATTACTCACCCGTCCGCCGCTCTCAA---GAGAAGCAAGCTTCTCT 357
||| |||||||||||||| ||| | | || |||||||| ||||
Sbjct 299 TATTCCTCACCCGTCCGCCACTCGCCACCCAAGGAGCAAGCTCCTCT 345
>seq34962
Length=1006
Score = 345 bits (382), Expect = 9e-93
Identities = 279/335 (83%), Gaps = 2/335 (1%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
||||||| |||||| ||||||| | |||||||||||| ||||||||||||| ||||||
Sbjct 590 TTTACAACCCGAAGGCCTTCTTCCTG-CACGCGGCATTG-CTGGATCAGGCTTGCGCCCA 647
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
|||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 648 TTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 707
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| ||| || |||||||||||||| ||| |||||||| ||||||||||| ||||| |||
Sbjct 708 GTGGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTGAGCCTTTACCCCAC 767
Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241
|||||| |||||| ||| | ||| || || |||| ||||| | ||||||| |||||
Sbjct 768 CAACTACCTAATCTGACATCGGCCGCTCCAATCGCGCGAGGCCTTACGGTCCCCCGCTTT 827
Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301
| || ||| ||||||||||||||||| |||| ||||||||||||| || ||
Sbjct 828 CATCCATAGATCGTATGCGGTATTAGCGCAGCTTTCGCTGCGTTATCCCCCACGACTGGG 887
Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336
|| |||| | ||||||||||||||| |||| |||
Sbjct 888 CACGTTCCGATGCATTACTCACCCGTTCGCCACTC 922
>seq24564
Length=585
Score = 262 bits (290), Expect = 8e-68
Identities = 185/209 (89%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| |||||
Sbjct 379 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 436
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 437 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 496
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||||||||||||||||||||| || |||||||||||||||| ||| ||||| ||
Sbjct 497 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCA 556
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATC 209
||||||||||||||| || ||||||||
Sbjct 557 CCAACTAGCTAATCCAACGCGGGCTCATC 585
>seq32520
Length=505
Score = 226 bits (250), Expect = 6e-57
Identities = 141/149 (95%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| |||||| ||||||| ||| |||||||||| ||||||||||||||| |||||
Sbjct 359 CTTTACAACCCGAAGGCCTTCTT-CACCCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 416
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 476
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTA 149
|||| ||||||||||||||||||||| ||
Sbjct 477 TGTGGCTGATCATCCTCTCAGACCAGCTA 505
>seq40246
Length=368801
Score = 205 bits (226), Expect = 2e-50
Identities = 168/202 (83%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76
||||||| ||| |||||| |||| ||||||| |||||||||||||||||||| ||||||
Sbjct 311039 CCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCC 311096
Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136
|||||||||| ||||| |||||| || |||||||||||| |||||||| ||||||||||
Sbjct 311097 CACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCG 311156
Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196
||||||| || | ||| | | |||||| |||| |||||| |||||||| ||||| |
Sbjct 311157 AAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACT 311216
Query 197 ACCTAGGCTCATCTGATAGCGC 218
|| ||||||||| | |||||
Sbjct 311217 ACGCAGGCTCATCAAACAGCGC 311238
>seq20801
Length=610
Score = 176 bits (194), Expect = 1e-41
Identities = 168/210 (80%), Gaps = 4/210 (2%)
Strand=Plus/Minus
Query 2 TTTACAATCC-GAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
||||||| || || | || |||| | |||||||| | |||||| |||| ||| || ||
Sbjct 270 TTTACAACCCAGAGGGCCGTCTTCCTG-CACGCGGCGT-GGCTGGGTCAGACTT-CGTCC 214
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||| ||||
Sbjct 213 ATTGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTATCTCAGTGCCAG 154
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||| |||||||||| | || |||||| | ||||||||||| |||||||
Sbjct 153 TGTGGGGGATTCTCCTCTCAGAGCCCCTAAAGATCGTAGACTTGGTGAGCCGTTACCTCG 94
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCT 210
||||||| |||||| || | || |||||
Sbjct 93 CCAACTATCTAATCTTACGCATGCCCATCT 64
>seq34591
Length=1716
Score = 172 bits (190), Expect = 1e-40
Identities = 233/318 (73%), Gaps = 19/318 (6%)
Strand=Plus/Plus
Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76
|||||| | || ||||||| ||| || ||||||||||||||||||| || ||||||
Sbjct 980 CCTTCTACCTCA-ACGCGGCGTTG-CTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCC 1037
Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136
|||| ||||||||| ||||||||| | |||||||||||| |||||| ||||| |||||
Sbjct 1038 CACTACTGCCTCCCATAGGAGTCTTGGCCGTGTCTCAGTCATAGTGTGGCTGATTATCCT 1097
Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196
|| |||||| ||| ||| |||||||||| ||||| | |||||| || ||||||||| |
Sbjct 1098 CTGGGACCAGCTACTAATCATCGCCTTGGTAAGCCACTGCCTCACTAAGTAGCTAATCAG 1157
Query 197 ACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTA 256
| | | | || | | ||| || ||| | ||||| || | ||
Sbjct 1158 A--TGCGAGCCCCTCCTCGAGCAGATTCC-----TCCTTTTGCTTCTC----AG--CCTA 1204
Query 257 TGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGC 314
| ||||||||| |||||||| ||| | ||| || ||| ||||| ||| || ||
Sbjct 1205 CGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGC 1262
Query 315 ATTACTCACCCGTCCGCC 332
|||||||||||||||||
Sbjct 1263 GTTACTCACCCGTCCGCC 1280
>seq4536
Length=917
Score = 129 bits (142), Expect = 1e-27
Identities = 146/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||| | |||| | ||||| | | ||||| || | | | | ||||||||||||||
Sbjct 281 CTTTACGACCCGAGGGCCTTCAT-CGTTCACGCAGCGTCGCATCG-TCAGGCTTTCGCCC 224
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||| | |||| | ||||| ||||||||||||||||||| | |||||||||| ||||
Sbjct 223 ATTGCGGATGATTCTCGACTGCAGCCTCCCGTAGGAGTCTGGGCAGTGTCTCAGTCCCAG 164
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
||| | ||| |||||| || || || | ||||||||||||||||||||||
Sbjct 163 TGTTGGCGGTCAATCTCTCAACCCGCCTAGACGTCTTAGCCTTGGTGAGCCATTACCTCA 104
Query 181 CCAACTAGCTAAT 193
||||| |||| ||
Sbjct 103 CCAACAAGCTGAT 91
>seq22
Length=40393389
Score = 125 bits (138), Expect = 2e-26
Identities = 86/96 (90%), Gaps = 1/96 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 18492665 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 18492723
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124
|||||||||||||| |||||||||||| ||||||||
Sbjct 18492724 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTG 18492759
Score = 80.6 bits (88), Expect = 6e-13
Identities = 72/89 (81%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 45 GATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGAC 104
|||| |||||| ||||||||||||| ||||||||||||| || | | ||||| |||
Sbjct 1295858 GATCGGGCTTTTGCCCATTGTCCAAGATTCCCCACTGCTACC-CTTATGAGAGTCCAGAC 1295916
Query 105 CGTGTCTCAGTTCCAGTGTGACTGATCAT 133
|||| |||||| | |||||| ||||| ||
Sbjct 1295917 CGTGCCTCAGTCCAAGTGTGGCTGATAAT 1295945
>seq127
Length=60962716
Score = 114 bits (126), Expect = 3e-23
Identities = 86/100 (86%), Gaps = 1/100 (1%)
Strand=Plus/Minus
Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83
|||| |||| | |||| |||||| |||||||||||||||||||| |||||||||||||
Sbjct 15335486 TCACTCACGAGATATTGT-TGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCT 15335428
Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 123
||| ||||| |||||| || ||||||||||| |||||||
Sbjct 15335427 GCCCCCCGTGGGAGTCCGGGTCGTGTCTCAGTCCCAGTGT 15335388
>seq14099
Length=708
Score = 113 bits (124), Expect = 1e-22
Identities = 133/184 (72%), Gaps = 16/184 (9%)
Strand=Plus/Minus
Query 152 GATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTG 211
||||||||||||||| ||| ||||| |||||||||||||||| ||| ||| | |||
Sbjct 708 GATCGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAATCAGACGCGGGCCCCTCTC 649
Query 212 ATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTC 271
|| ||| || ||||| |||| ||| | || |||| ||||||||
Sbjct 648 ATGGCGTAAA----------------CTTTCCCCCGAAGGGCACATCCGGTGTTAGCGTC 605
Query 272 CGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGC 331
||||||| |||||||| || || | |||||| |||| | | |||||||||||| |||
Sbjct 604 CGTTTCCAAACGTTATTCCGAACCATAAGGCAGGTTCCCACGTGTTACTCACCCGTGCGC 545
Query 332 CGCT 335
| ||
Sbjct 544 CACT 541
>seq39058
Length=1081
Score = 107 bits (118), Expect = 4e-21
Identities = 77/89 (87%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||||||||||||||||||||| || ||||||||| |||||| ||||||||| ||
Sbjct 1081 TGTGGCTGATCATCCTCTCAGACCAGCTAAGGATCGTCGGCTTGGTAGGCCATTACCCCA 1022
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATC 209
||||||| ||||||| || ||||||||
Sbjct 1021 CCAACTACCTAATCCTACGCGGGCTCATC 993
>seq187
Length=45274173
Score = 91.5 bits (100), Expect = 3e-16
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 127 TGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186
||||||||||||| |||||| ||| ||| ||| |||||| || ||||||||||||||||
Sbjct 41020258 TGATCATCCTCTCGGACCAGCTACTGATTATCGACTTGGTAAGTCATTACCTCACCAACT 41020317
Query 187 AGCTAATCCGAC-CTAG 202
|||||||| ||| ||||
Sbjct 41020318 AGCTAATCAGACGCTAG 41020334
>seq145
Length=44152522
Score = 89.7 bits (98), Expect = 1e-15
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
||||| |||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 19678111 CACGCTGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 19678169
Query 89 CCGTAGGAGTCTGG 102
||||||||||||||
Sbjct 19678170 CCGTAGGAGTCTGG 19678183
>seq11641
Length=770
Score = 87.8 bits (96), Expect = 4e-15
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 126 CTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAAC 185
||||||||||||||||||||| ||| || | ||||||||||||| ||||||| |||||
Sbjct 1 CTGATCATCCTCTCAGACCAGCTACCCGTCTTAGCCTTGGTGAGCCGTTACCTCGCCAAC 60
Query 186 TAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241
||||| || | | ||| ||| |||||| ||||| ||||||| ||||
Sbjct 61 TAGCTGATAGGCCGCGAACTCCTCTTATAGCGTCAGGCCTTGCGGTCCCCGACTTT 116
>seq38187
Length=1143
Score = 77.0 bits (84), Expect = 7e-12
Identities = 71/89 (80%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 250 GGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATT-C 308
||||||||||||||||||| | |||||| | ||||| |||||| ||||||| ||
Sbjct 58 GGACGTATGCGGTATTAGCTTAGGTTTCCCCAAGTTATTCCCCACACTCAGGCAGGTTAT 117
Query 309 CTAGGCATTACTCACCCGTCCGCCGCTCT 337
| | | |||||||||||| |||||||||
Sbjct 118 CCACGTGTTACTCACCCGTGCGCCGCTCT 146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071568562880
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