Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1036 93.3 3e-17 seq103 75.2 7e-12 seq808 71.6 8e-11 seq22 71.6 8e-11 >seq1036 Length=7046 Score = 93.3 bits (102), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 2388 TCTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 2445 Query 108 GTAATACAACGCAAGCT 124 ||||| |||||| |||| Sbjct 2446 GTAAT-CAACGCGAGCT 2461 >seq103 Length=1049538 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 762447 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 762390 Query 122 GCT 124 ||| Sbjct 762389 GCT 762387 >seq808 Length=9131 Score = 71.6 bits (78), Expect = 8e-11 Identities = 46/49 (94%), Gaps = 1/49 (2%) Strand=Plus/Minus Query 64 CATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAAT 112 || ||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 6356 CAATCGGTAG-AAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT 6309 >seq22 Length=40393389 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | |||||| |||| |||||||||||||||||||||| | |||||| | Sbjct 33416076 TTCAATCGGTAGGA-GCGACGCGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 33416133 Query 122 GCT 124 ||| Sbjct 33416134 GCT 33416136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300686506280