Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq14921 205 2e-50 seq34962 190 4e-46 seq24564 190 4e-46 seq34591 168 1e-39 seq20801 141 2e-31 seq40246 136 8e-30 seq32520 136 8e-30 seq39058 131 3e-28 seq4536 127 4e-27 seq22 116 7e-24 seq29765 113 9e-23 seq24870 109 1e-21 seq14099 104 5e-20 seq127 93.3 8e-17 seq6402 89.7 1e-15 seq145 78.8 2e-12 >seq14921 Length=713 Score = 205 bits (226), Expect = 2e-50 Identities = 229/304 (75%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| |||||| ||||||||||||||||||||| Sbjct 20 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 79 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||||| | ||| |||||||| || ||||| ||| Sbjct 80 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACGGAT 139 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||||||| |||| | | ||||||| |||||| | | || |||||| Sbjct 140 CGTCGCCTTGGTGGGCCATTACCCCGCCAACTAGCTAATCCGACATCGGCTCATCTTATC 199 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 ||| | |||| | | | | || || | |||||||||||||||| Sbjct 200 GCGCGAGGTCTT--GCGATCCCCCGCTTTCACCCGTAGGTCGTATGCGGTATTAGCGTAA 257 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| ||||||| || | | ||||||| || | | || || ||||||||||||| Sbjct 258 GTTTCCCTACGTTATCCCCCACGATAAGGCAGATT-CCGATGTATTCCTCACCCGTCCGC 316 Query 301 CACT 304 |||| Sbjct 317 CACT 320 >seq34962 Length=1006 Score = 190 bits (210), Expect = 4e-46 Identities = 138/160 (86%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| ||| || ||||||||||||||||||||| Sbjct 621 GGCATTGCTGGATCAGGCTTGCGCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAG 680 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | || |||||||| || ||||| ||| Sbjct 681 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACAGAT 740 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||||||||||| || ||| | |||||||||||||||| Sbjct 741 CGTCGGCTTGGTGAGCCTTTACCCCACCAACTACCTAATC 780 >seq24564 Length=585 Score = 190 bits (210), Expect = 4e-46 Identities = 147/175 (84%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| |||||| ||||||||||||||||||||| Sbjct 411 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 470 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||||||||||||||||||||||||||| | ||| |||||||| || |||| ||| Sbjct 471 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTATGGAT 530 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 ||||| |||||| ||| ||| | ||||||||| |||||| |||| || |||| Sbjct 531 CGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAATCCAACGCGGGCTCATC 585 >seq34591 Length=1716 Score = 168 bits (186), Expect = 1e-39 Identities = 221/304 (73%), Gaps = 18/304 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||| ||||||| |||| ||||||| | || || ||||||| ||||||||| ||| Sbjct 996 GGCGTTGCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCATAG 1055 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||| ||||||||||||||| | |||||| | | | ||||| | || ||||| || Sbjct 1056 GAGTCTTGGCCGTGTCTCAGTCATAGTGTGGCTGATTATCCTCTGGGACCAGCTACTAAT 1115 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| || | | ||||| || || |||||| | |||||||| || | | Sbjct 1116 CATCGCCTTGGTAAGCCACTGCCTCACTAAGTAGCTAATCAGATGCGAGCCCCTCCTCGA 1175 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| | ||| | | || | ||||||||| Sbjct 1176 GCAGATTCCTCCTT------------TTGC--TTCTCAGCC--TACGGGGTATTAGCAGC 1219 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 1220 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 1278 Query 300 CCAC 303 |||| Sbjct 1279 CCAC 1282 >seq20801 Length=610 Score = 141 bits (156), Expect = 2e-31 Identities = 148/193 (77%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| |||| |||| || | |||||| |||||| ||| ||||||||||||||||| Sbjct 238 GGCGTGGCTGGGTCAGACTT-CGTCCATTGCCCAATATTCCCTACTGCTGCCTCCCGTAG 180 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||| ||||||| ||| ||||| | | |||||||| | ||| ||| Sbjct 179 GAGTCTGGCCCGTATCTCAGTGCCAGTGTGGGGGATTCTCCTCTCAGAGCCCCTAAAGAT 120 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||| | ||||||| || ||| ||| ||||||| |||||| ||| |||||||| | Sbjct 119 CGTAGACTTGGTGAGCCGTTACCTCGCCAACTATCTAATCTTACGCATGCCCATCTCTAT 60 Query 181 GCGATAAATCTTT 193 |||||||||||| Sbjct 59 CCGATAAATCTTT 47 >seq40246 Length=368801 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 311061 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 311120 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 311121 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 311180 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 311181 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 311213 >seq32520 Length=505 Score = 136 bits (150), Expect = 8e-30 Identities = 99/115 (86%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| |||||| ||||||||||||||||||||| Sbjct 391 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 450 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTA 115 |||||||| |||||||||||| ||| |||||| | ||| |||||||| || |||| Sbjct 451 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAGACCAGCTA 505 >seq39058 Length=1081 Score = 131 bits (144), Expect = 3e-28 Identities = 160/219 (73%), Gaps = 17/219 (8%) Strand=Plus/Minus Query 87 TGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCA 146 |||||| | ||| |||||||| || |||| ||||||||||||||| ||| |||| | || Sbjct 1081 TGTGGCTGATCATCCTCTCAGACCAGCTAAGGATCGTCGGCTTGGTAGGCCATTACCCCA 1022 Query 147 CCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAATGA 206 |||||||||||||| |||| || |||| | ||||||||||||||||| ||| Sbjct 1021 CCAACTACCTAATCCTACGCGGGCTCATCCCTGGGCGATAAATCTTTGGTC--CGAA--- 967 Query 207 TGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAA 266 ||||| || |||||||||| | |||| | |||||||| | || Sbjct 966 -----------GACATCATCCGGTATTAGCAGTAATTTCTCACTGTTATTCCGAACCCAA 918 Query 267 AGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTA 305 ||||| || | |||| ||||| ||||||| |||||||| Sbjct 917 GGGCAGATT-CCCACGCGTTACGCACCCGTGCGCCACTA 880 >seq4536 Length=917 Score = 127 bits (140), Expect = 4e-27 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 2 GCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGG 61 ||||||| | ||||| |||| ||||||| | | || | | ||||| |||||||||||| Sbjct 248 GCGTCGCATCGTCAGGCTTTCGCCCATTGCGGATGATTCTCGACTGCAGCCTCCCGTAGG 189 Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121 ||||||||| |||||||||||||| ||| | || |||| |||||| ||| ||| || Sbjct 188 AGTCTGGGCAGTGTCTCAGTCCCAGTGTTGGCGGTCAATCTCTCAACCCGCCTAGACGTC 129 Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 | | ||||||| || |||| ||||||||| | || || Sbjct 128 TTAGCCTTGGTGAGCCATTACCTCACCAACAAGCTGAT 91 >seq22 Length=40393389 Score = 116 bits (128), Expect = 7e-24 Identities = 81/92 (88%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 18492670 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 18492729 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGC 92 ||||||||||||||||||||||||| |||||| Sbjct 18492730 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGC 18492761 >seq29765 Length=533 Score = 113 bits (124), Expect = 9e-23 Identities = 135/184 (73%), Gaps = 17/184 (9%) Strand=Plus/Minus Query 125 GGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGA 184 |||||||| ||| |||| | |||||||||||||||| |||| || |||| || |||| Sbjct 533 GGCTTGGTAGGCCATTACCCCACCAACTACCTAATCTTACGCGGGCTCATCCTTGGGCGA 474 Query 185 TAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTT 244 ||||||||||||| ||| ||||| || |||||||||| || ||| Sbjct 473 TAAATCTTTGGTC--CGAA--------------GACATCATCCGGTATTAGCAGTCATTT 430 Query 245 CCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | || |||||||| | || ||||| || | |||| ||||| ||||||| ||||||| Sbjct 429 CTAACTGTTATTCCGAACCCAAGGGCAGATT-CCCACGCGTTACGCACCCGTGCGCCACT 371 Query 305 AAGC 308 |||| Sbjct 370 AAGC 367 >seq24870 Length=579 Score = 109 bits (120), Expect = 1e-21 Identities = 133/182 (73%), Gaps = 17/182 (9%) Strand=Plus/Minus Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATA 186 |||||||||| |||| | ||||||||| |||||| |||| || |||| || |||||| Sbjct 577 CTTGGTGGGCCATTACCCCACCAACTAGCTAATCTTACGCGGGCTCATCCTTGGGCGATA 518 Query 187 AATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCC 246 ||||||||||| ||| ||||| || |||||||||| || |||| Sbjct 517 AATCTTTGGTC--CGAA--------------GACATCATCCGGTATTAGCAGTCATTTCT 474 Query 247 AAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTAA 306 || |||||||| | || ||||| || | |||| ||||| ||||||| ||||||||| Sbjct 473 AACTGTTATTCCGAACCCAAGGGCAGATT-CCCACGCGTTACGCACCCGTGCGCCACTAA 415 Query 307 GC 308 || Sbjct 414 GC 413 >seq14099 Length=708 Score = 104 bits (114), Expect = 5e-20 Identities = 140/190 (74%), Gaps = 19/190 (10%) Strand=Plus/Minus Query 118 GATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTT 177 |||||||| |||||| ||| ||| | ||||||||| |||||| | |||| |||| ||| Sbjct 708 GATCGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAATCAGACGCGGGCCCCTCTC 649 Query 178 TCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCG 237 ||| |||| |||| | ||| | || |||| |||| |||||| Sbjct 648 ATGGCG-TAAA-CTTTCCCCC--GAAGG--GC---------ACATC---CGGTGTTAGCG 607 Query 238 TTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTC 297 | ||||||||||||||||||| | |||||||||| | |||||||||||||||||| Sbjct 606 TCCGTTTCCAAACGTTATTCCGAACCATAAGGCAGGTT-CCCACGTGTTACTCACCCGTG 548 Query 298 CGCCACTAAG 307 |||||||||| Sbjct 547 CGCCACTAAG 538 >seq127 Length=60962716 Score = 93.3 bits (102), Expect = 8e-17 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 9 TGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGG 68 || ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| || Sbjct 15335468 TGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGG 15335409 Query 69 GCCGTGTCTCAGTCCCAATGT 89 | ||||||||||||||| ||| Sbjct 15335408 GTCGTGTCTCAGTCCCAGTGT 15335388 >seq6402 Length=874 Score = 89.7 bits (98), Expect = 1e-15 Identities = 159/228 (70%), Gaps = 17/228 (7%) Strand=Plus/Plus Query 92 CCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAAC 151 ||| || | |||||| |||||||||| || | | |||||||||| ||| ||||||||| Sbjct 1 CCGGTCGATCTCTCAATCCGGCTACCCGTCTTAGCCTTGGTGGGCCGTTACCTCACCAAC 60 Query 152 TACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTT-TGGTCAAAGA----ATGA 206 || || || |||||||| | | ||| ||||| ||| |||| || | | Sbjct 61 TAGCTGATAGGCCGCGAACTCCTCTCCCAGCGTCGGGCCTTGCGGTCCCCGACTTTAGTA 120 Query 207 TGCCATCC--TCTGACAT------TATGCGGTATTAGCGTTCG--TTTCCAAACGTTATT 256 || ||||| ||||| |||||||||||| |||| |||| | |||| Sbjct 121 TGACATCCAGGAGGACATCAACCATATGCGGTATTA--ATTCGCCTTTCGGCGAGCTATT 178 Query 257 CCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 || | || | ||| || ||| ||||||||||| ||||||| ||||||| Sbjct 179 CCCCACTAAGAGGTAGATTGTTCACGTGTTACGCACCCGTTCGCCACT 226 >seq145 Length=44152522 Score = 78.8 bits (86), Expect = 2e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||||||||| Sbjct 19678122 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 19678181 Query 67 GGG 69 ||| Sbjct 19678182 GGG 19678184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997998183936