Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq23215 134 2e-29
seq10515 102 1e-19
seq808 86.0 7e-15
seq344 78.8 1e-12
seq57 77.0 4e-12
seq2603 75.2 1e-11
seq23984 73.4 5e-11
seq103 73.4 5e-11
>seq23215
Length=601
Score = 134 bits (148), Expect = 2e-29
Identities = 149/194 (77%), Gaps = 5/194 (3%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||||||| ||||| | | |||||||||||| |||||||||||||||| ||||||
Sbjct 132 CTAGAAACCAACGAAATAAGACCACACGTCCTATTCCATTATTCCATGCTAATCTATTCG 191
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| || |||||| | || |||||||||||| ||| ||||| |||||| |||| | ||
Sbjct 192 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCACAGTAAACGTCCTGTTTCCCCGACA 251
Query 126 -CACCAATGAAGG-CATACGGGCTCACCAAGAGGT--AGGGCTGGGTAATGCAGTACTCG 181
| ||| |||||| || | || || || |||| ||| | || | |||| | ||
Sbjct 252 CCCCCAGTGAAGGAGATGC-GGTTCCGCAGAAGGTGAAGGCCCGGCCGAACCAGTGCACG 310
Query 182 CCGTGAGGCGGACC 195
| ||||||||||||
Sbjct 311 CGGTGAGGCGGACC 324
>seq10515
Length=788
Score = 102 bits (112), Expect = 1e-19
Identities = 85/102 (83%), Gaps = 3/102 (3%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||| | |||||||| ||||| | ||||||| | |||||||||||||||||||||
Sbjct 386 CTACAGACCAACAAGATAGGCCAGA--GTCCTATCGTGTTATTCCATGCTAATGTATTCA 329
Query 66 G-GCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106
| ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 328 GAGCGTAGGCCTGCTTTGAACACTCTAATTTACTCAAAGTAA 287
>seq808
Length=9131
Score = 86.0 bits (94), Expect = 7e-15
Identities = 85/109 (78%), Gaps = 6/109 (6%)
Strand=Plus/Minus
Query 4 CTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATT 63
||||||||||||||||||| | | || | | ||||| |||||||||||||||| | ||
Sbjct 5534 CTCTAGAAACCAACAAAATGGAGCCGGA-GCCCTATCTTATTATTCCATGCTAACATGTT 5476
Query 64 CGGGCGTAA-----GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107
| | | || |||||| |||||||||| |||||||||| |||||
Sbjct 5475 CAGTTGCAATCCACGCCTGCCTTGAACACTCCAATTTTCTCACAGTAAA 5427
>seq344
Length=88605
Score = 78.8 bits (86), Expect = 1e-12
Identities = 77/98 (79%), Gaps = 1/98 (1%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAA 72
|||||| |||||| | | |||||| | |||| |||||||||||||| | | ||||
Sbjct 77359 CCAACATAATAGGACTGGAA-TCCTATGATGTTATCCCATGCTAATGTATACAGACGTAG 77417
Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110
|| |||||||| ||||||||||| |||| |||| |||
Sbjct 77418 GCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGT 77455
>seq57
Length=33024243
Score = 77.0 bits (84), Expect = 4e-12
Identities = 78/99 (79%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC-GGGCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 13340372 CCAACATAATAGGACCGGAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 13340314
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110
|| |||||||| |||||||||| |||| |||| |||
Sbjct 13340313 GGCTTGCTTTGAGTACTCTAATTTCTTCAAAGTAACAGT 13340275
>seq2603
Length=970
Score = 75.2 bits (82), Expect = 1e-11
Identities = 79/103 (77%), Gaps = 6/103 (6%)
Strand=Plus/Plus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||| | | || | | ||||| |||||||||||||||| | ||| | |
Sbjct 182 AAACCAACAAAATGGAGCCGGA-GCCCTATCTTATTATTCCATGCTAACATGTTCAGTTG 240
Query 70 TAA-----GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107
|| |||||| |||||||||| |||||||||| |||||
Sbjct 241 CAATCCACGCCTGCCTTGAACACTCCAATTTTCTCACAGTAAA 283
>seq23984
Length=591
Score = 73.4 bits (80), Expect = 5e-11
Identities = 77/99 (78%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC-GGGCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | | |||
Sbjct 429 CCAACATAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGTGTA 371
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110
|| |||||||| |||||| |||| |||| |||| |||
Sbjct 370 GGCTTGCTTTGAGCACTCTTATTTCTTCAAAGTAACAGT 332
>seq103
Length=1049538
Score = 73.4 bits (80), Expect = 5e-11
Identities = 77/99 (78%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||| | |||||| || | |||| | | ||||||||||||||||||| | | || ||
Sbjct 761622 CCAATATAATAGGACCGGAA-TCCTCTGATGTTATTCCATGCTAATGTATACAGAGCATA 761564
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110
|| |||||||| ||||||||||| |||| |||| |||
Sbjct 761563 GGCTTGCTTTGATCACTCTAATTTCTTCAAAGTAACAGT 761525
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 594967941564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |