Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq23215 134 2e-29 seq10515 102 1e-19 seq808 86.0 7e-15 seq344 78.8 1e-12 seq57 77.0 4e-12 seq2603 75.2 1e-11 seq23984 73.4 5e-11 seq103 73.4 5e-11 >seq23215 Length=601 Score = 134 bits (148), Expect = 2e-29 Identities = 149/194 (77%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||| ||||| | | |||||||||||| |||||||||||||||| |||||| Sbjct 132 CTAGAAACCAACGAAATAAGACCACACGTCCTATTCCATTATTCCATGCTAATCTATTCG 191 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| ||| ||||| |||||| |||| | || Sbjct 192 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCACAGTAAACGTCCTGTTTCCCCGACA 251 Query 126 -CACCAATGAAGG-CATACGGGCTCACCAAGAGGT--AGGGCTGGGTAATGCAGTACTCG 181 | ||| |||||| || | || || || |||| ||| | || | |||| | || Sbjct 252 CCCCCAGTGAAGGAGATGC-GGTTCCGCAGAAGGTGAAGGCCCGGCCGAACCAGTGCACG 310 Query 182 CCGTGAGGCGGACC 195 | |||||||||||| Sbjct 311 CGGTGAGGCGGACC 324 >seq10515 Length=788 Score = 102 bits (112), Expect = 1e-19 Identities = 85/102 (83%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| | |||||||| ||||| | ||||||| | ||||||||||||||||||||| Sbjct 386 CTACAGACCAACAAGATAGGCCAGA--GTCCTATCGTGTTATTCCATGCTAATGTATTCA 329 Query 66 G-GCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 | ||||| ||||||||||||||||||||||| ||||| |||| Sbjct 328 GAGCGTAGGCCTGCTTTGAACACTCTAATTTACTCAAAGTAA 287 >seq808 Length=9131 Score = 86.0 bits (94), Expect = 7e-15 Identities = 85/109 (78%), Gaps = 6/109 (6%) Strand=Plus/Minus Query 4 CTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATT 63 ||||||||||||||||||| | | || | | ||||| |||||||||||||||| | || Sbjct 5534 CTCTAGAAACCAACAAAATGGAGCCGGA-GCCCTATCTTATTATTCCATGCTAACATGTT 5476 Query 64 CGGGCGTAA-----GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | | | || |||||| |||||||||| |||||||||| ||||| Sbjct 5475 CAGTTGCAATCCACGCCTGCCTTGAACACTCCAATTTTCTCACAGTAAA 5427 >seq344 Length=88605 Score = 78.8 bits (86), Expect = 1e-12 Identities = 77/98 (79%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAA 72 |||||| |||||| | | |||||| | |||| |||||||||||||| | | |||| Sbjct 77359 CCAACATAATAGGACTGGAA-TCCTATGATGTTATCCCATGCTAATGTATACAGACGTAG 77417 Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || |||||||| ||||||||||| |||| |||| ||| Sbjct 77418 GCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGT 77455 >seq57 Length=33024243 Score = 77.0 bits (84), Expect = 4e-12 Identities = 78/99 (79%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC-GGGCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 13340372 CCAACATAATAGGACCGGAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 13340314 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || |||||||| |||||||||| |||| |||| ||| Sbjct 13340313 GGCTTGCTTTGAGTACTCTAATTTCTTCAAAGTAACAGT 13340275 >seq2603 Length=970 Score = 75.2 bits (82), Expect = 1e-11 Identities = 79/103 (77%), Gaps = 6/103 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||| | | || | | ||||| |||||||||||||||| | ||| | | Sbjct 182 AAACCAACAAAATGGAGCCGGA-GCCCTATCTTATTATTCCATGCTAACATGTTCAGTTG 240 Query 70 TAA-----GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || |||||| |||||||||| |||||||||| ||||| Sbjct 241 CAATCCACGCCTGCCTTGAACACTCCAATTTTCTCACAGTAAA 283 >seq23984 Length=591 Score = 73.4 bits (80), Expect = 5e-11 Identities = 77/99 (78%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC-GGGCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | | ||| Sbjct 429 CCAACATAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGTGTA 371 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || |||||||| |||||| |||| |||| |||| ||| Sbjct 370 GGCTTGCTTTGAGCACTCTTATTTCTTCAAAGTAACAGT 332 >seq103 Length=1049538 Score = 73.4 bits (80), Expect = 5e-11 Identities = 77/99 (78%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||| | |||||| || | |||| | | ||||||||||||||||||| | | || || Sbjct 761622 CCAATATAATAGGACCGGAA-TCCTCTGATGTTATTCCATGCTAATGTATACAGAGCATA 761564 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || |||||||| ||||||||||| |||| |||| ||| Sbjct 761563 GGCTTGCTTTGATCACTCTAATTTCTTCAAAGTAACAGT 761525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594967941564