Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq38530 163 7e-38 >seq38530 Length=1102 Score = 163 bits (180), Expect = 7e-38 Identities = 176/229 (77%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 167 CTTGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTC 226 ||| ||| |||||||||||||||||| | | ||| || || ||||| |||| ||||| Sbjct 1010 CTTCACCACCTTGCGGCAGATCTTCGACACTTCGCGTTCGAGCGCACGC-CACCCGCTTC 952 Query 227 GCGGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACT-TCAAATTCGATCTCGCCCT 285 |||||||||||||| ||||||||||| |||| | | ||| | | || ||| || Sbjct 951 ACGGGTGTAGTAGCGCACGATGTCGCGAATCGCATCTTCGGTCACAGT-GACTTCGGTCT 893 Query 286 TCTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCT 345 |||||||||| ||| | |||||||| || || || |||||| || |||| || Sbjct 892 TCTTCAGGCCGTTGTTCTTCATCTGCTTTGGTAGCAGATAACGGATGGCAATATTGACCT 833 Query 346 TCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 ||||||||||||||||||| | |||||||||||||||||| || || || Sbjct 832 TCTCGTCTTCGGTGTAACCAGACAGGCGAATCACTTCCATACGATCAAG 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157933790336