Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq28097 185 6e-45
seq2729 134 1e-29
seq31341 123 2e-26
seq25568 123 2e-26
seq19692 109 4e-22
seq4392 104 2e-20
seq18390 89.7 4e-16
seq7668 89.7 4e-16
seq12916 80.6 2e-13
>seq28097
Length=549
Score = 185 bits (204), Expect = 6e-45
Identities = 125/140 (89%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||
Sbjct 261 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGTCCTG 202
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||||| |||||| | |||| ||||||| |||||| ||||||||||||||||||
Sbjct 201 CTTTCGCACCTGCTCGACTTGTCTGTCTCGCAGTCAAGCCTCCTTTTGCCATTGCACTAT 142
Query 121 CACTACGATTTCCGACCGTA 140
|| |||||| ||||||||||
Sbjct 141 CAGTACGATGTCCGACCGTA 122
>seq2729
Length=971
Score = 134 bits (148), Expect = 1e-29
Identities = 115/140 (82%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 247 TACCTTTTATTCGTTGAGCGATGGCCCTTCCACACGGGACCACCGGATCACTATGACCGA 306
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| ||||||| | |||| ||||||| ||| ||| ||| ||||||||||| |
Sbjct 307 CTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCAC--T 364
Query 121 CA-CTACGATTTCCGACCGT 139
|| | |||||||||||||||
Sbjct 365 CAGCGACGATTTCCGACCGT 384
>seq31341
Length=514
Score = 123 bits (136), Expect = 2e-26
Identities = 112/140 (80%), Gaps = 1/140 (1%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||| |||||||||||||||||||| || | ||||||||||||||| ||
Sbjct 406 TACCTTTTATCCTTTGAGCGATGGCCCTTCCAT-CAGAACCACCGGATCACTATATCCGT 348
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| ||| || | |||||| |||| || ||||||| ||| ||||||||||||
Sbjct 347 CTTTCGACCCTGGTCGACTTGTTGGTCTCACAGTCAAGCAAGCTTATGCCATTGCACTCC 288
Query 121 CACTACGATTTCCGACCGTA 140
| |||| || || | ||||
Sbjct 287 CCGTACGGTTACCAAGCGTA 268
>seq25568
Length=565
Score = 123 bits (136), Expect = 2e-26
Identities = 114/139 (82%), Gaps = 4/139 (3%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 446 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGA 387
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119
|||||| |||||| | | || || || ||| ||| ||| |||||||||||||||| |
Sbjct 386 CTTTCGTCTCTGCT-TGGCCGTCGC-CTTGCAGTCAGGCAGGCTTTTGCCATTGCACTCA 329
Query 120 TCACTACGATTTCCGACCG 138
|| | |||||||||||||
Sbjct 328 ACA-TCCGATTTCCGACCG 311
>seq19692
Length=643
Score = 109 bits (120), Expect = 4e-22
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||| |||||||| ||||||||||| || | || |||||||||| | ||||
Sbjct 169 TACCTTTTATCCTTTGAGCGACGGCCCTTCCATACAGAACCGCCGGATCACTTTAGCCTG 110
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||||| |||||| | || ||| || |||||||| ||| | | | ||| || |
Sbjct 109 CTTTCGCACCTGCTCGGCTGGTCAGCCTCACAGTCAAGCACCCTTATACTAATGCGCTCT 50
Query 121 CACTACGATTTCCGACCGTA 140
||||||| || ||||||
Sbjct 49 ACGTACGATTACCAACCGTA 30
>seq4392
Length=923
Score = 104 bits (114), Expect = 2e-20
Identities = 108/139 (78%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||| ||||| || | | |||||||||||||||| ||
Sbjct 2 TACCTTTTATCCGTTGAGCGACGGCCCACTCACGCGGAACCACCGGATCACTATGGCCGA 61
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119
|||||| |||||| | |||| ||||||| ||| || ||| |||||||||||| |
Sbjct 62 CTTTCGTCCCTGCTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTGTGCCATTGCACTCA 121
Query 120 TCACTACGATTTCCGACCG 138
|| |||||||||||||
Sbjct 122 GCA-GCCGATTTCCGACCG 139
>seq18390
Length=654
Score = 89.7 bits (98), Expect = 4e-16
Identities = 89/113 (79%), Gaps = 2/113 (2%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||| ||||||||| |||| |||||| || || ||||||||||| | |||
Sbjct 310 TACCTTTTATCTGTTGAGCGACGGCC-TTCCATCCAGCACCGCCGGATCACTAAGCCCTA 252
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113
|||||| | ||| || | || | | |||| || |||||||| ||||| || ||
Sbjct 251 CTTTCGTACCTGTTCGACTTATAG-TCTCACAGTCAAGCACCCTTTTACCTTT 200
>seq7668
Length=845
Score = 89.7 bits (98), Expect = 4e-16
Identities = 92/119 (77%), Gaps = 1/119 (1%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||| |||||||||| |||||||||| | | |||||||||||| | |||
Sbjct 345 TACCTTTTATCTGTTGAGCGATAGCCCTTCCATACGGGACTACCGGATCACTAAGCCCTA 286
Query 61 CTTTCGCA-TCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| | ||||||| | | | | ||||||| | ||||| ||| | || |||| ||
Sbjct 285 CTTTCGTACTCTGCTCGACTCATGGGTCTCGCAGTTTAGCACCCTTCTACCTTTGCGCT 227
>seq12916
Length=731
Score = 80.6 bits (88), Expect = 2e-13
Identities = 87/114 (76%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAG-CCACCGGATCACTATGACCT 59
||||||||||| ||||||||||||||||||||| | | |||||||||||||| | ||
Sbjct 41 TACCTTTTATCTGTTGAGCGATGGCCCTTCCATCCCGGGACCACCGGATCACTAAGGCCG 100
Query 60 GCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113
|||||| |||||| | | |||||| |||||||| ||| | || ||
Sbjct 101 ACTTTCGTCCCTGCTCGCCCCATCGGGCTCGCAGTCAAGCACCCTTCTACCTTT 154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351867188200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |