Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq28097 185 6e-45 seq2729 134 1e-29 seq31341 123 2e-26 seq25568 123 2e-26 seq19692 109 4e-22 seq4392 104 2e-20 seq18390 89.7 4e-16 seq7668 89.7 4e-16 seq12916 80.6 2e-13 >seq28097 Length=549 Score = 185 bits (204), Expect = 6e-45 Identities = 125/140 (89%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||| Sbjct 261 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGTCCTG 202 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||||| |||||| | |||| ||||||| |||||| |||||||||||||||||| Sbjct 201 CTTTCGCACCTGCTCGACTTGTCTGTCTCGCAGTCAAGCCTCCTTTTGCCATTGCACTAT 142 Query 121 CACTACGATTTCCGACCGTA 140 || |||||| |||||||||| Sbjct 141 CAGTACGATGTCCGACCGTA 122 >seq2729 Length=971 Score = 134 bits (148), Expect = 1e-29 Identities = 115/140 (82%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||| ||||||||||||||||||||| | ||||||||||||||||||| Sbjct 247 TACCTTTTATTCGTTGAGCGATGGCCCTTCCACACGGGACCACCGGATCACTATGACCGA 306 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||||||| ||| ||| ||| ||||||||||| | Sbjct 307 CTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCAC--T 364 Query 121 CA-CTACGATTTCCGACCGT 139 || | ||||||||||||||| Sbjct 365 CAGCGACGATTTCCGACCGT 384 >seq31341 Length=514 Score = 123 bits (136), Expect = 2e-26 Identities = 112/140 (80%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| || | ||||||||||||||| || Sbjct 406 TACCTTTTATCCTTTGAGCGATGGCCCTTCCAT-CAGAACCACCGGATCACTATATCCGT 348 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||| || | |||||| |||| || ||||||| ||| |||||||||||| Sbjct 347 CTTTCGACCCTGGTCGACTTGTTGGTCTCACAGTCAAGCAAGCTTATGCCATTGCACTCC 288 Query 121 CACTACGATTTCCGACCGTA 140 | |||| || || | |||| Sbjct 287 CCGTACGGTTACCAAGCGTA 268 >seq25568 Length=565 Score = 123 bits (136), Expect = 2e-26 Identities = 114/139 (82%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 446 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGA 387 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| |||||| | | || || || ||| ||| ||| |||||||||||||||| | Sbjct 386 CTTTCGTCTCTGCT-TGGCCGTCGC-CTTGCAGTCAGGCAGGCTTTTGCCATTGCACTCA 329 Query 120 TCACTACGATTTCCGACCG 138 || | ||||||||||||| Sbjct 328 ACA-TCCGATTTCCGACCG 311 >seq19692 Length=643 Score = 109 bits (120), Expect = 4e-22 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||| ||||||||||| || | || |||||||||| | |||| Sbjct 169 TACCTTTTATCCTTTGAGCGACGGCCCTTCCATACAGAACCGCCGGATCACTTTAGCCTG 110 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||||| |||||| | || ||| || |||||||| ||| | | | ||| || | Sbjct 109 CTTTCGCACCTGCTCGGCTGGTCAGCCTCACAGTCAAGCACCCTTATACTAATGCGCTCT 50 Query 121 CACTACGATTTCCGACCGTA 140 ||||||| || |||||| Sbjct 49 ACGTACGATTACCAACCGTA 30 >seq4392 Length=923 Score = 104 bits (114), Expect = 2e-20 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||| ||||| || | | |||||||||||||||| || Sbjct 2 TACCTTTTATCCGTTGAGCGACGGCCCACTCACGCGGAACCACCGGATCACTATGGCCGA 61 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| |||||| | |||| ||||||| ||| || ||| |||||||||||| | Sbjct 62 CTTTCGTCCCTGCTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTGTGCCATTGCACTCA 121 Query 120 TCACTACGATTTCCGACCG 138 || ||||||||||||| Sbjct 122 GCA-GCCGATTTCCGACCG 139 >seq18390 Length=654 Score = 89.7 bits (98), Expect = 4e-16 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||| ||||||||| |||| |||||| || || ||||||||||| | ||| Sbjct 310 TACCTTTTATCTGTTGAGCGACGGCC-TTCCATCCAGCACCGCCGGATCACTAAGCCCTA 252 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 |||||| | ||| || | || | | |||| || |||||||| ||||| || || Sbjct 251 CTTTCGTACCTGTTCGACTTATAG-TCTCACAGTCAAGCACCCTTTTACCTTT 200 >seq7668 Length=845 Score = 89.7 bits (98), Expect = 4e-16 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||| |||||||||| |||||||||| | | |||||||||||| | ||| Sbjct 345 TACCTTTTATCTGTTGAGCGATAGCCCTTCCATACGGGACTACCGGATCACTAAGCCCTA 286 Query 61 CTTTCGCA-TCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| | ||||||| | | | | ||||||| | ||||| ||| | || |||| || Sbjct 285 CTTTCGTACTCTGCTCGACTCATGGGTCTCGCAGTTTAGCACCCTTCTACCTTTGCGCT 227 >seq12916 Length=731 Score = 80.6 bits (88), Expect = 2e-13 Identities = 87/114 (76%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAG-CCACCGGATCACTATGACCT 59 ||||||||||| ||||||||||||||||||||| | | |||||||||||||| | || Sbjct 41 TACCTTTTATCTGTTGAGCGATGGCCCTTCCATCCCGGGACCACCGGATCACTAAGGCCG 100 Query 60 GCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 |||||| |||||| | | |||||| |||||||| ||| | || || Sbjct 101 ACTTTCGTCCCTGCTCGCCCCATCGGGCTCGCAGTCAAGCACCCTTCTACCTTT 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351867188200