Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq23215 224 1e-56
seq10515 158 1e-36
seq57 134 1e-29
seq103 132 5e-29
seq147 125 7e-27
seq23984 123 3e-26
seq344 122 9e-26
seq808 113 5e-23
seq22 102 8e-20
>seq23215
Length=601
Score = 224 bits (248), Expect = 1e-56
Identities = 162/186 (87%), Gaps = 1/186 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||| |||||| |||||||||||||| | || | |||||||| ||||||||||
Sbjct 245 GGAAACAGGACGTTTACTGTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 186
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| ||||||||||| |||||||||||| ||| ||||| || ||||||||||||||
Sbjct 185 GATTAGCATGGAATAATGGAATAGGACGTGTGGTCTTATTTCGTTGGTTTCTAGGACCG- 127
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||| ||||||||| |||||||||||| |||| |||||||||||
Sbjct 126 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTC 67
Query 181 TTGGAT 186
||||||
Sbjct 66 TTGGAT 61
>seq10515
Length=788
Score = 158 bits (174), Expect = 1e-36
Identities = 144/178 (81%), Gaps = 4/178 (2%)
Strand=Plus/Plus
Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72
||||||||| ||||||||| ||||||||||||||| |||| |||||||||| ||||||
Sbjct 287 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATACATTAGCATGGA 346
Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132
|||| | ||||||| | | |||| |||| ||| | |||||||| |||||||| |
Sbjct 347 ATAACACGATAGGACT--CTGGCCTATCTTGTTGGTCTGTAGGACCGGA-GTAATGATTA 403
Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190
| | ||| ||||||||| | ||||| ||||||| |||||||||||||||||||||
Sbjct 404 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 461
>seq57
Length=33024243
Score = 134 bits (148), Expect = 1e-29
Identities = 142/183 (78%), Gaps = 3/183 (2%)
Strand=Plus/Plus
Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68
||| |||||||||| ||||||||| |||||||| |||| |||| | |||||||| ||
Sbjct 13340275 ACTGTTACTTTGAAGAAATTAGAGTACTCAAAGCAAGCCTACGCTCTGTATACATTAGCA 13340334
Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128
||| |||| | |||||| | |||| ||||| ||| || | ||| || ||||||
Sbjct 13340335 TGGGATAACATCATAGGAT-TCCGGTCCTATTATGTTGGCCTTCGGGATCGGA-GTAATG 13340392
Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188
|| || ||||| ||||||||| | ||||| || |||| |||||||||||||||||||
Sbjct 13340393 ATTAACACGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 13340452
Query 189 ATT 191
|||
Sbjct 13340453 ATT 13340455
Score = 125 bits (138), Expect = 7e-27
Identities = 139/179 (78%), Gaps = 5/179 (3%)
Strand=Plus/Plus
Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72
|||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||||
Sbjct 27221630 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 27221689
Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGT-AGGTTTCTAGGACCGCCCGTAATGATA 131
|||| | |||||| | ||| ||||| ||| || ||| ||| || ||||| ||
Sbjct 27221690 ATAACATCATAGGAT-TCAGGTCCTATTATGTTAGCCTTCG-GGATCGGA-GTAATAATT 27221746
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190
|| | ||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 27221747 AACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTAT 27221805
Score = 120 bits (132), Expect = 3e-25
Identities = 138/182 (76%), Gaps = 3/182 (2%)
Strand=Plus/Plus
Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68
||| |||||||||| ||||||||| | |||||| | || |||| | |||||||| ||
Sbjct 8400070 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGTGAGACTACGCTCTGTATACATTAGCA 8400129
Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128
||| |||| | |||||| | |||| ||||| ||| || | ||| || ||||||
Sbjct 8400130 TGGGATAACATCATAGGAT-TCCGGTCCTATTATGTTGGCCTTCGGGATCGGA-GTAATG 8400187
Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188
|| || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||
Sbjct 8400188 ATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 8400247
Query 189 AT 190
||
Sbjct 8400248 AT 8400249
>seq103
Length=1049538
Score = 132 bits (146), Expect = 5e-29
Identities = 141/182 (77%), Gaps = 3/182 (2%)
Strand=Plus/Plus
Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68
||| |||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| ||
Sbjct 761525 ACTGTTACTTTGAAGAAATTAGAGTGATCAAAGCAAGCCTATGCTCTGTATACATTAGCA 761584
Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128
|||||||| | | |||| | |||| ||||| | | || | |||| || ||||||
Sbjct 761585 TGGAATAACATCAGAGGAT-TCCGGTCCTATTATATTGGCCTTAAGGATCGAA-GTAATG 761642
Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188
|| || | ||| ||||||| | | ||||| || |||| |||||||||||||||||||
Sbjct 761643 ATTAACAAGGACAGTCGGGAGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 761702
Query 189 AT 190
||
Sbjct 761703 AT 761704
>seq147
Length=783512
Score = 125 bits (138), Expect = 7e-27
Identities = 139/179 (78%), Gaps = 5/179 (3%)
Strand=Plus/Plus
Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72
|||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||||
Sbjct 698989 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 699048
Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGT-AGGTTTCTAGGACCGCCCGTAATGATA 131
|||| | |||||| | ||| ||||| ||| || ||| ||| || ||||| ||
Sbjct 699049 ATAACATCATAGGAT-TCAGGTCCTATTATGTTAGCCTTCG-GGATCGGA-GTAATAATT 699105
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190
|| | ||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 699106 AACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTAT 699164
>seq23984
Length=591
Score = 123 bits (136), Expect = 3e-26
Identities = 139/182 (76%), Gaps = 3/182 (2%)
Strand=Plus/Plus
Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68
||| |||||||||| |||| |||| | |||||||| |||| ||| | |||||||| ||
Sbjct 332 ACTGTTACTTTGAAGAAATAAGAGTGCTCAAAGCAAGCCTACACTCTGTATACATTAGCA 391
Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128
||| |||| | |||||| | |||| ||||| ||| || | ||| || ||||||
Sbjct 392 TGGGATAACATCATAGGATTT-CGGTCCTATTATGTTGGCCTTCGGGATCGGA-GTAATG 449
Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188
|| || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||
Sbjct 450 ATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 509
Query 189 AT 190
||
Sbjct 510 AT 511
>seq344
Length=88605
Score = 122 bits (134), Expect = 9e-26
Identities = 137/180 (76%), Gaps = 4/180 (2%)
Strand=Plus/Minus
Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCAT 69
||| |||||||||| ||||||||| | |||||||| |||| | | |||||||| |||
Sbjct 77455 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGTCTGTATACATTAGCAT 77396
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGACCGCCCGTAATG 128
|| |||| | |||||| | | || ||||| ||| || ||| || | | ||||||
Sbjct 77395 GGGATAACATCATAGGAT-TCCAGTCCTATTATGTTGGACTTCGAGATCGGA--GTAATG 77339
Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188
|| || | ||| |||||||||| | ||||| || |||| |||||||||||||||||||
Sbjct 77338 ATTAACAGGGAAAGTCGGGGGTATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 77279
>seq808
Length=9131
Score = 113 bits (124), Expect = 5e-23
Identities = 136/181 (75%), Gaps = 7/181 (4%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTC--GAATACATTACC 67
|||||| ||| |||||| ||| |||||| |||||| | |||| ||| | ||| |
Sbjct 5427 TTTACTGTGAGAAAATTGGAGTGTTCAAGGCAGGCGTGGATTGCAACTGAACATGTTAGC 5486
Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACC-GCCCGTAA 126
||||||||||| ||||| | | ||| || ||||||| ||||||||| | | ||||
Sbjct 5487 ATGGAATAATAAGATAGGGC-TCCGGCTCCATTTTGTTGGTTTCTAGAGCGTGGGAGTAA 5545
Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186
|||| ||| ||| ||| ||||||| |||||||| | || ||||||||||| |||||
Sbjct 5546 TGATTGATAGGGACAGTTGGGGGTGCTAGTATTCAGCGGCCAGAGGTGAAATTCATGGAT 5605
Query 187 T 187
|
Sbjct 5606 T 5606
>seq22
Length=40393389
Score = 102 bits (112), Expect = 8e-20
Identities = 138/187 (74%), Gaps = 4/187 (2%)
Strand=Plus/Minus
Query 6 CAGG-ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACAT 63
|||| ||| |||||||||| ||||||||| | ||||||| |||| |||| | ||||||
Sbjct 33417004 CAGGCACTGTTACTTTGAAGAAATTAGAGTGCCCAAAGCAAGCCTACGCTCTATATACAT 33416945
Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123
|| ||||| ||| | |||||| |||| ||||| ||| || | ||| || |
Sbjct 33416944 TAGCATGGGATAGCATCATAGGATAC-CGGTCCTATTATGTTGGCCTTCGGGATCGGA-G 33416887
Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183
||||||| | | ||| || ||||| | ||||| || || | ||||||||||||||
Sbjct 33416886 TAATGATTGACAGGGACAGCTGGGGGCATTCGTATTTCATAGTTATAGGTGAAATTCTTG 33416827
Query 184 GATTTAT 190
|||||||
Sbjct 33416826 GATTTAT 33416820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511800379840
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