Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq23215 224 1e-56 seq10515 158 1e-36 seq57 134 1e-29 seq103 132 5e-29 seq147 125 7e-27 seq23984 123 3e-26 seq344 122 9e-26 seq808 113 5e-23 seq22 102 8e-20 >seq23215 Length=601 Score = 224 bits (248), Expect = 1e-56 Identities = 162/186 (87%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||| |||||| |||||||||||||| | || | |||||||| |||||||||| Sbjct 245 GGAAACAGGACGTTTACTGTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 186 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| ||||||||||| |||||||||||| ||| ||||| || |||||||||||||| Sbjct 185 GATTAGCATGGAATAATGGAATAGGACGTGTGGTCTTATTTCGTTGGTTTCTAGGACCG- 127 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| |||||||||||| |||| ||||||||||| Sbjct 126 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTC 67 Query 181 TTGGAT 186 |||||| Sbjct 66 TTGGAT 61 >seq10515 Length=788 Score = 158 bits (174), Expect = 1e-36 Identities = 144/178 (81%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||||| |||| |||||||||| |||||| Sbjct 287 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATACATTAGCATGGA 346 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | ||||||| | | |||| |||| ||| | |||||||| |||||||| | Sbjct 347 ATAACACGATAGGACT--CTGGCCTATCTTGTTGGTCTGTAGGACCGGA-GTAATGATTA 403 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 404 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 461 >seq57 Length=33024243 Score = 134 bits (148), Expect = 1e-29 Identities = 142/183 (78%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| ||||||||| |||||||| |||| |||| | |||||||| || Sbjct 13340275 ACTGTTACTTTGAAGAAATTAGAGTACTCAAAGCAAGCCTACGCTCTGTATACATTAGCA 13340334 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | |||| ||||| ||| || | ||| || |||||| Sbjct 13340335 TGGGATAACATCATAGGAT-TCCGGTCCTATTATGTTGGCCTTCGGGATCGGA-GTAATG 13340392 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || ||||| ||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 13340393 ATTAACACGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 13340452 Query 189 ATT 191 ||| Sbjct 13340453 ATT 13340455 Score = 125 bits (138), Expect = 7e-27 Identities = 139/179 (78%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||||| Sbjct 27221630 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 27221689 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGT-AGGTTTCTAGGACCGCCCGTAATGATA 131 |||| | |||||| | ||| ||||| ||| || ||| ||| || ||||| || Sbjct 27221690 ATAACATCATAGGAT-TCAGGTCCTATTATGTTAGCCTTCG-GGATCGGA-GTAATAATT 27221746 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || | ||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 27221747 AACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTAT 27221805 Score = 120 bits (132), Expect = 3e-25 Identities = 138/182 (76%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| ||||||||| | |||||| | || |||| | |||||||| || Sbjct 8400070 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGTGAGACTACGCTCTGTATACATTAGCA 8400129 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | |||| ||||| ||| || | ||| || |||||| Sbjct 8400130 TGGGATAACATCATAGGAT-TCCGGTCCTATTATGTTGGCCTTCGGGATCGGA-GTAATG 8400187 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 8400188 ATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 8400247 Query 189 AT 190 || Sbjct 8400248 AT 8400249 >seq103 Length=1049538 Score = 132 bits (146), Expect = 5e-29 Identities = 141/182 (77%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| || Sbjct 761525 ACTGTTACTTTGAAGAAATTAGAGTGATCAAAGCAAGCCTATGCTCTGTATACATTAGCA 761584 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 |||||||| | | |||| | |||| ||||| | | || | |||| || |||||| Sbjct 761585 TGGAATAACATCAGAGGAT-TCCGGTCCTATTATATTGGCCTTAAGGATCGAA-GTAATG 761642 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| ||||||| | | ||||| || |||| ||||||||||||||||||| Sbjct 761643 ATTAACAAGGACAGTCGGGAGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 761702 Query 189 AT 190 || Sbjct 761703 AT 761704 >seq147 Length=783512 Score = 125 bits (138), Expect = 7e-27 Identities = 139/179 (78%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||||| Sbjct 698989 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 699048 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGT-AGGTTTCTAGGACCGCCCGTAATGATA 131 |||| | |||||| | ||| ||||| ||| || ||| ||| || ||||| || Sbjct 699049 ATAACATCATAGGAT-TCAGGTCCTATTATGTTAGCCTTCG-GGATCGGA-GTAATAATT 699105 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || | ||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 699106 AACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTAT 699164 >seq23984 Length=591 Score = 123 bits (136), Expect = 3e-26 Identities = 139/182 (76%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| |||| |||| | |||||||| |||| ||| | |||||||| || Sbjct 332 ACTGTTACTTTGAAGAAATAAGAGTGCTCAAAGCAAGCCTACACTCTGTATACATTAGCA 391 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | |||| ||||| ||| || | ||| || |||||| Sbjct 392 TGGGATAACATCATAGGATTT-CGGTCCTATTATGTTGGCCTTCGGGATCGGA-GTAATG 449 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 450 ATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 509 Query 189 AT 190 || Sbjct 510 AT 511 >seq344 Length=88605 Score = 122 bits (134), Expect = 9e-26 Identities = 137/180 (76%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCAT 69 ||| |||||||||| ||||||||| | |||||||| |||| | | |||||||| ||| Sbjct 77455 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGTCTGTATACATTAGCAT 77396 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGACCGCCCGTAATG 128 || |||| | |||||| | | || ||||| ||| || ||| || | | |||||| Sbjct 77395 GGGATAACATCATAGGAT-TCCAGTCCTATTATGTTGGACTTCGAGATCGGA--GTAATG 77339 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| |||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 77338 ATTAACAGGGAAAGTCGGGGGTATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 77279 >seq808 Length=9131 Score = 113 bits (124), Expect = 5e-23 Identities = 136/181 (75%), Gaps = 7/181 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTC--GAATACATTACC 67 |||||| ||| |||||| ||| |||||| |||||| | |||| ||| | ||| | Sbjct 5427 TTTACTGTGAGAAAATTGGAGTGTTCAAGGCAGGCGTGGATTGCAACTGAACATGTTAGC 5486 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACC-GCCCGTAA 126 ||||||||||| ||||| | | ||| || ||||||| ||||||||| | | |||| Sbjct 5487 ATGGAATAATAAGATAGGGC-TCCGGCTCCATTTTGTTGGTTTCTAGAGCGTGGGAGTAA 5545 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| ||| ||| ||| ||||||| |||||||| | || ||||||||||| ||||| Sbjct 5546 TGATTGATAGGGACAGTTGGGGGTGCTAGTATTCAGCGGCCAGAGGTGAAATTCATGGAT 5605 Query 187 T 187 | Sbjct 5606 T 5606 >seq22 Length=40393389 Score = 102 bits (112), Expect = 8e-20 Identities = 138/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 6 CAGG-ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACAT 63 |||| ||| |||||||||| ||||||||| | ||||||| |||| |||| | |||||| Sbjct 33417004 CAGGCACTGTTACTTTGAAGAAATTAGAGTGCCCAAAGCAAGCCTACGCTCTATATACAT 33416945 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 || ||||| ||| | |||||| |||| ||||| ||| || | ||| || | Sbjct 33416944 TAGCATGGGATAGCATCATAGGATAC-CGGTCCTATTATGTTGGCCTTCGGGATCGGA-G 33416887 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| | | ||| || ||||| | ||||| || || | |||||||||||||| Sbjct 33416886 TAATGATTGACAGGGACAGCTGGGGGCATTCGTATTTCATAGTTATAGGTGAAATTCTTG 33416827 Query 184 GATTTAT 190 ||||||| Sbjct 33416826 GATTTAT 33416820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511800379840