Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq28097 192 6e-47 seq2729 147 2e-33 seq25568 132 5e-29 seq31341 123 2e-26 seq4392 123 2e-26 seq19692 109 5e-22 seq12916 91.5 1e-16 seq18390 80.6 3e-13 seq7668 77.0 3e-12 seq40246 75.2 1e-11 >seq28097 Length=549 Score = 192 bits (212), Expect = 6e-47 Identities = 136/156 (87%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 249 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGTCCTGCTTTCGCACCTG 190 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| ||||||||||||||| ||| ||||||||||||| | |||||||| Sbjct 189 CTCGACTTGTCTGTCTCGCAGTCAAGCCTCCTTTTGCCATTGCACTATCAGTACGATGTC 130 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| ||| |||||||| ||||||||||| Sbjct 129 CGACCGTACCTAGGAGACCTTCGAACTCCTCCGTTA 94 >seq2729 Length=971 Score = 147 bits (162), Expect = 2e-33 Identities = 127/156 (81%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | |||||||||||||||||||| |||||| ||| Sbjct 259 GTTGAGCGATGGCCCTTCCACACGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 318 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||||| || ||||||||||||||||| | | ||||| || Sbjct 319 CTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCAGC-GACGATTTC 377 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | ||| ||| ||| || ||||||||| Sbjct 378 CGACCGTCCTGAGCCCACCATCGCGCGCCTCCGTTA 413 >seq25568 Length=565 Score = 132 bits (146), Expect = 5e-29 Identities = 129/158 (82%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | |||||||||||||||||||| |||||| ||| Sbjct 434 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 375 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT-AACCTCACGATGT 142 || | |||||| | || ||||||| || |||| |||||||||||| ||| || |||| | Sbjct 374 CTTG-GCCGTCGC-CTTGCAGTCAGGCAGGCTTTTGCCATTGCACTCAACATC-CGATTT 318 Query 143 CCGACCGTGATT-AGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| |||| ||| ||| ||| || ||||||||| Sbjct 317 CCGACCG-GATTGAGCCTACCATCGCGCGCCTCCGTTA 281 >seq31341 Length=514 Score = 123 bits (136), Expect = 2e-26 Identities = 121/155 (78%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| |||||||||||||||||||| || |||||| |||| Sbjct 393 TTGAGCGATGGCCCTTCCAT-CAGAACCACCGGATCACTATATCCGTCTTTCGACCCTGG 335 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144 |||| || |||| ||||||||| |||||||||||||||||| || ||| | || Sbjct 334 TCGACTTGTTGGTCTCACAGTCAAGCAAGCTTATGCCATTGCACTCCCCGTACGGTTACC 275 Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | |||| ||||| | ||||||||| Sbjct 274 AAGCGTACTGAGCTTACCTTTGAAAGCCTCCGTTA 240 >seq4392 Length=923 Score = 123 bits (136), Expect = 2e-26 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||| || | ||||||||||||||||||| || |||||| |||| Sbjct 14 GTTGAGCGACGGCCCACTCACGCGGAACCACCGGATCACTATGGCCGACTTTCGTCCCTG 73 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||||| || |||| |||||||||||| | | |||| || Sbjct 74 CTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTGTGCCATTGCACTCAGCAGCCGATTTC 133 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| ||| ||| || ||||||||| Sbjct 134 CGACCGGCCTGAGCCCACCATCGCGCGCCTCCGTTA 169 >seq19692 Length=643 Score = 109 bits (120), Expect = 5e-22 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||| ||||||||||| ||||||| |||||||||| | ||||||||||||||||| Sbjct 156 TTGAGCGACGGCCCTTCCATACAGAACCGCCGGATCACTTTAGCCTGCTTTCGCACCTGC 97 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144 ||| |||| ||| ||||||||| ||||| | | ||| || | ||||| || Sbjct 96 TCGGCTGGTCAGCCTCACAGTCAAGCACCCTTATACTAATGCGCTCTACGTACGATTACC 37 Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | || ||||| | | ||||||||| Sbjct 36 AACCGTACTGAGGGTACCTTTGCGAGCCTCCGTTA 2 >seq12916 Length=731 Score = 91.5 bits (100), Expect = 1e-16 Identities = 115/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGA-ACCACCGGATCACTATGACCTGCTTTCGCACCT 82 ||||||||||||||||||||| | | ||||||||||||||| | || |||||| ||| Sbjct 53 GTTGAGCGATGGCCCTTCCATCCCGGGACCACCGGATCACTAAGGCCGACTTTCGTCCCT 112 Query 83 GCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGT 142 ||||| || || ||||||||||||| ||| | || || | || | |||| Sbjct 113 GCTCGCCCCATCGGGCTCGCAGTCAAGCACCCTTCTACCTTTACGCTCGATGCCCGATTG 172 Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || |||| | | || ||||| | ||||||||||| Sbjct 173 CCAACCGGGCTGAGGGTACCTTTGCACTCCTCCGTTA 209 >seq18390 Length=654 Score = 80.6 bits (88), Expect = 3e-13 Identities = 113/156 (72%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| |||| |||||| ||| ||| ||||||||||| | ||| |||||| ||||| Sbjct 298 GTTGAGCGACGGCC-TTCCATCCAGCACCGCCGGATCACTAAGCCCTACTTTCGTACCTG 240 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 |||| | | |||| ||||||||| ||| | || || | || | | ||| | Sbjct 239 TTCGA-CTTATAGTCTCACAGTCAAGCACCCTTTTACCTTTACGCTCAAAGCCTGATTGC 181 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | | || ||||| | |||||||||||| Sbjct 180 CAACCAGGCTGAGGGTACCTTTGGGCTCCTCCGTTA 145 >seq7668 Length=845 Score = 77.0 bits (84), Expect = 3e-12 Identities = 82/107 (77%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCAC-CT 82 |||||||||| |||||||||| | | || |||||||||||| | ||| |||||| || || Sbjct 333 GTTGAGCGATAGCCCTTCCATACGGGACTACCGGATCACTAAGCCCTACTTTCGTACTCT 274 Query 83 GCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||||| | | ||||||||| ||| ||| | || |||| || Sbjct 273 GCTCGACTCATGGGTCTCGCAGTTTAGCACCCTTCTACCTTTGCGCT 227 >seq40246 Length=368801 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 126131 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 126190 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 126191 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 126239 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 215074 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 215015 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 215014 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 214966 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 351047 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 350988 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 350987 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 350939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473415351352