Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq28097 192 6e-47
seq2729 147 2e-33
seq25568 132 5e-29
seq31341 123 2e-26
seq4392 123 2e-26
seq19692 109 5e-22
seq12916 91.5 1e-16
seq18390 80.6 3e-13
seq7668 77.0 3e-12
seq40246 75.2 1e-11
>seq28097
Length=549
Score = 192 bits (212), Expect = 6e-47
Identities = 136/156 (87%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 249 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGTCCTGCTTTCGCACCTG 190
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| ||| ||||||||||||||| ||| ||||||||||||| | ||||||||
Sbjct 189 CTCGACTTGTCTGTCTCGCAGTCAAGCCTCCTTTTGCCATTGCACTATCAGTACGATGTC 130
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||||| ||| |||||||| |||||||||||
Sbjct 129 CGACCGTACCTAGGAGACCTTCGAACTCCTCCGTTA 94
>seq2729
Length=971
Score = 147 bits (162), Expect = 2e-33
Identities = 127/156 (81%), Gaps = 1/156 (1%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | | |||||||||||||||||||| |||||| |||
Sbjct 259 GTTGAGCGATGGCCCTTCCACACGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 318
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| |||| ||||||||||| || ||||||||||||||||| | | ||||| ||
Sbjct 319 CTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCAGC-GACGATTTC 377
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||||| | ||| ||| ||| || |||||||||
Sbjct 378 CGACCGTCCTGAGCCCACCATCGCGCGCCTCCGTTA 413
>seq25568
Length=565
Score = 132 bits (146), Expect = 5e-29
Identities = 129/158 (82%), Gaps = 6/158 (4%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | | |||||||||||||||||||| |||||| |||
Sbjct 434 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 375
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT-AACCTCACGATGT 142
|| | |||||| | || ||||||| || |||| |||||||||||| ||| || |||| |
Sbjct 374 CTTG-GCCGTCGC-CTTGCAGTCAGGCAGGCTTTTGCCATTGCACTCAACATC-CGATTT 318
Query 143 CCGACCGTGATT-AGCTGACCTTCGTGCTCCTCCGTTA 179
||||||| |||| ||| ||| ||| || |||||||||
Sbjct 317 CCGACCG-GATTGAGCCTACCATCGCGCGCCTCCGTTA 281
>seq31341
Length=514
Score = 123 bits (136), Expect = 2e-26
Identities = 121/155 (78%), Gaps = 1/155 (1%)
Strand=Plus/Minus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||||||||||||||||| |||||||||||||||||||| || |||||| ||||
Sbjct 393 TTGAGCGATGGCCCTTCCAT-CAGAACCACCGGATCACTATATCCGTCTTTCGACCCTGG 335
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144
|||| || |||| ||||||||| |||||||||||||||||| || ||| | ||
Sbjct 334 TCGACTTGTTGGTCTCACAGTCAAGCAAGCTTATGCCATTGCACTCCCCGTACGGTTACC 275
Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| ||| | |||| ||||| | |||||||||
Sbjct 274 AAGCGTACTGAGCTTACCTTTGAAAGCCTCCGTTA 240
>seq4392
Length=923
Score = 123 bits (136), Expect = 2e-26
Identities = 121/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||| || | ||||||||||||||||||| || |||||| ||||
Sbjct 14 GTTGAGCGACGGCCCACTCACGCGGAACCACCGGATCACTATGGCCGACTTTCGTCCCTG 73
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| |||| ||||||||||| || |||| |||||||||||| | | |||| ||
Sbjct 74 CTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTGTGCCATTGCACTCAGCAGCCGATTTC 133
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|||||| | ||| ||| ||| || |||||||||
Sbjct 134 CGACCGGCCTGAGCCCACCATCGCGCGCCTCCGTTA 169
>seq19692
Length=643
Score = 109 bits (120), Expect = 5e-22
Identities = 117/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||||| ||||||||||| ||||||| |||||||||| | |||||||||||||||||
Sbjct 156 TTGAGCGACGGCCCTTCCATACAGAACCGCCGGATCACTTTAGCCTGCTTTCGCACCTGC 97
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144
||| |||| ||| ||||||||| ||||| | | ||| || | ||||| ||
Sbjct 96 TCGGCTGGTCAGCCTCACAGTCAAGCACCCTTATACTAATGCGCTCTACGTACGATTACC 37
Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||| | || ||||| | | |||||||||
Sbjct 36 AACCGTACTGAGGGTACCTTTGCGAGCCTCCGTTA 2
>seq12916
Length=731
Score = 91.5 bits (100), Expect = 1e-16
Identities = 115/157 (73%), Gaps = 1/157 (1%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGA-ACCACCGGATCACTATGACCTGCTTTCGCACCT 82
||||||||||||||||||||| | | ||||||||||||||| | || |||||| |||
Sbjct 53 GTTGAGCGATGGCCCTTCCATCCCGGGACCACCGGATCACTAAGGCCGACTTTCGTCCCT 112
Query 83 GCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGT 142
||||| || || ||||||||||||| ||| | || || | || | ||||
Sbjct 113 GCTCGCCCCATCGGGCTCGCAGTCAAGCACCCTTCTACCTTTACGCTCGATGCCCGATTG 172
Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|| |||| | | || ||||| | |||||||||||
Sbjct 173 CCAACCGGGCTGAGGGTACCTTTGCACTCCTCCGTTA 209
>seq18390
Length=654
Score = 80.6 bits (88), Expect = 3e-13
Identities = 113/156 (72%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| |||| |||||| ||| ||| ||||||||||| | ||| |||||| |||||
Sbjct 298 GTTGAGCGACGGCC-TTCCATCCAGCACCGCCGGATCACTAAGCCCTACTTTCGTACCTG 240
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
|||| | | |||| ||||||||| ||| | || || | || | | ||| |
Sbjct 239 TTCGA-CTTATAGTCTCACAGTCAAGCACCCTTTTACCTTTACGCTCAAAGCCTGATTGC 181
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| ||| | | || ||||| | ||||||||||||
Sbjct 180 CAACCAGGCTGAGGGTACCTTTGGGCTCCTCCGTTA 145
>seq7668
Length=845
Score = 77.0 bits (84), Expect = 3e-12
Identities = 82/107 (77%), Gaps = 1/107 (1%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCAC-CT 82
|||||||||| |||||||||| | | || |||||||||||| | ||| |||||| || ||
Sbjct 333 GTTGAGCGATAGCCCTTCCATACGGGACTACCGGATCACTAAGCCCTACTTTCGTACTCT 274
Query 83 GCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
|||||| | | ||||||||| ||| ||| | || |||| ||
Sbjct 273 GCTCGACTCATGGGTCTCGCAGTTTAGCACCCTTCTACCTTTGCGCT 227
>seq40246
Length=368801
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 126131 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 126190
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 126191 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 126239
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 215074 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 215015
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 215014 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 214966
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 351047 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 350988
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 350987 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 350939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473415351352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |