Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq14921 437 2e-120
seq34962 385 1e-104
seq24564 275 2e-71
seq32520 242 9e-62
seq34591 205 2e-50
seq20801 187 6e-45
seq40246 167 6e-39
seq4536 158 3e-36
seq22 145 2e-32
seq39058 141 2e-31
seq16391 131 4e-28
seq145 105 2e-20
seq127 104 6e-20
seq38187 84.2 5e-14
>seq14921
Length=713
Score = 437 bits (484), Expect = 2e-120
Identities = 338/399 (85%), Gaps = 2/399 (1%)
Strand=Plus/Plus
Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76
|||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1 AGGCCTTCTTCACCCACGCGGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCC 60
Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCC 120
Query 137 TCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCC 196
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCATTACCCCGCCAACTAGCTAATCC 180
Query 197 CATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT-GGTCTTGCGACGT 255
| | || ||||| || | | |||| | | |||||| |||| | | | ||
Sbjct 181 GACATCGGCTCATCTTATCGCGCGAGGTCTTGCGATCCCCCGCTTTCACCCGTAGGTCG- 239
Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC 315
|||||||||||||| |||||| |||||||||| | || |||||| |||| |
Sbjct 240 TATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGATAAGGCAGATTCCGATGT 299
Query 316 ATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGA 375
||| ||||||||||||||||||| || | ||| |||||||| || || | ||||||||
Sbjct 300 ATTCCTCACCCGTCCGCCACTCGCCACCCAAGGAGCAAGCTCCTCTGTGCTGCCGTTCGA 359
Query 376 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||||||||||||||||||||||||||| ||||||
Sbjct 360 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCACTCTGAG 398
>seq34962
Length=1006
Score = 385 bits (426), Expect = 1e-104
Identities = 333/411 (81%), Gaps = 10/411 (2%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
||||||||||||||||||||||| | |||||||||| |||| ||||||||||||||||||
Sbjct 590 TTTACAACCCGAAGGCCTTCTTCCTGCACGCGGCATTGCTGGATCAGGCTTGCGCCCATT 649
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
|| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 650 GTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 709
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
|||||||| ||||||||||||||||| |||||||| || |||| ||| ||||||| |||
Sbjct 710 GGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTGAGCCTTTACCCCACCA 769
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
|||| |||||| | | || ||| || | | |||||| | |||||||| ||||
Sbjct 770 ACTACCTAATCTGACATCGGCCGCTCCAATCGCGCGAGGCCTTACGGTCCCCCGCTTTCA 829
Query 245 TCTTGCGACGTTATGCGGTATTAGC-CACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303
|| || |||||||||||||| || | |||| |||||||||| | | |||
Sbjct 830 TCCATAGATCGTATGCGGTATTAGCGCAGC-TTTCGCTGCGTTATCCCCCACGACTGGGC 888
Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363
| |||| | |||||||||||||| |||||||||| ||||| ||| |||
Sbjct 889 ACGTTCCGATGCATTACTCACCCGTTCGCCACTCGT--------CAGCACCTTGCGGCCT 940
Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 941 GTTACCGTTCGACTTGCATGTGTAAAGCATGCCGCCAGCGTTCAATCTGAG 991
>seq24564
Length=585
Score = 275 bits (304), Expect = 2e-71
Identities = 185/207 (89%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
||||||||||| | ||||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct 379 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 438
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| ||
Sbjct 439 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATG 498
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
|||||| |||||||||||||||||||| |||||||||||| ||| |||| ||||||| ||
Sbjct 499 TGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCACC 558
Query 184 AACTAGCTAATCCCATCTGGGTTCATC 210
||||||||||||| | ||| |||||
Sbjct 559 AACTAGCTAATCCAACGCGGGCTCATC 585
>seq32520
Length=505
Score = 242 bits (268), Expect = 9e-62
Identities = 142/147 (97%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 359 CTTTACAACCCGAAGGCCTTCTTCACCCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 418
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 478
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTA 150
|||||| ||||||||||||||||||||
Sbjct 479 TGGCTGATCATCCTCTCAGACCAGCTA 505
>seq34591
Length=1716
Score = 205 bits (226), Expect = 2e-50
Identities = 288/403 (71%), Gaps = 30/403 (7%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | | ||||||| | ||| |||||||||| ||||||||
Sbjct 965 TTCACGACCCGTGGGCCTTCTACCTCAACGCGGCGTTGCTCCATCAGGCTTTCGCCCATT 1024
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||| ||||||||| ||||||||| | |||||||||||| |||||
Sbjct 1025 GCGGAAAATTCCCCACTACTGCCTCCCATAGGAGTCTTGGCCGTGTCTCAGTCATAGTGT 1084
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| | ||||||| ||||||||| ||| |||||| ||| |||| | || | | |
Sbjct 1085 GGCTGATTATCCTCTGGGACCAGCTACTAATCATCGCCTTGGTAAGCCACTGCCTCACTA 1144
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
| ||||||||| || | | | ||| || ||| ||| ||| ||||
Sbjct 1145 AGTAGCTAATCAGATGCGAGCCCCTCCTCGAG-CAGA---------TTCCTCCT-TTTG- 1192
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
||| | || | ||||||||| |||||||||| ||| | ||||||| ||||
Sbjct 1193 -CTTCTCAGCCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 1251
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
| ||| | | ||||||||||||||||||| |||| | || ||
Sbjct 1252 GGTTCTTACGCGTTACTCACCCGTCCGCCAC-------CGAA--AACA--------CCAC 1294
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407
|| |||| ||||||||||||||| || |||||||||||||||
Sbjct 1295 TTTCCGTCTGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCA 1337
>seq20801
Length=610
Score = 187 bits (206), Expect = 6e-45
Identities = 158/192 (82%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
|||||||||| || |||| ||||| | |||||||| |||||| |||| ||| || ||||
Sbjct 270 TTTACAACCCAGAGGGCCGTCTTCCTGCACGCGGCGTGGCTGGGTCAGACTT-CGTCCAT 212
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
|| |||||||||| ||||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct 211 TGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTATCTCAGTGCCAGTG 152
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
||| | | |||||||||| | ||| |||||| | || |||| ||| ||||| ||||
Sbjct 151 TGGGGGATTCTCCTCTCAGAGCCCCTAAAGATCGTAGACTTGGTGAGCCGTTACCTCGCC 92
Query 184 AACTAGCTAATC 195
||||| ||||||
Sbjct 91 AACTATCTAATC 80
>seq40246
Length=368801
Score = 167 bits (184), Expect = 6e-39
Identities = 142/175 (81%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79
||||||||| |||||| || |||| ||| ||||| |||||||||| ||| ||||||||
Sbjct 311039 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 311098
Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139
|||||||| ||||| |||||| || |||||||||||| |||||||||||| ||||||
Sbjct 311099 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 311158
Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194
|||||||||| | ||| | | || ||| ||| ||||| ||||||| |||||
Sbjct 311159 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAAT 311213
>seq4536
Length=917
Score = 158 bits (174), Expect = 3e-36
Identities = 150/192 (78%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 3 ACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62
||||||| |||||| ||||||| || | ||||| || | || | |||||||| ||||||
Sbjct 282 ACTTTACGACCCGAGGGCCTTCATCGTTCACGCAGCGTCGCATCGTCAGGCTTTCGCCCA 223
Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122
||| | | |||| | ||||| ||||||||||||||||||| | |||||||||| |||||
Sbjct 222 TTGCGGATGATTCTCGACTGCAGCCTCCCGTAGGAGTCTGGGCAGTGTCTCAGTCCCAGT 163
Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182
|| | ||||| |||||| || |||| || | |||| |||| ||||||||| | |
Sbjct 162 GTTGGCGGTCAATCTCTCAACCCGCCTAGACGTCTTAGCCTTGGTGAGCCATTACCTCAC 103
Query 183 CAACTAGCTAAT 194
|||| |||| ||
Sbjct 102 CAACAAGCTGAT 91
>seq22
Length=40393389
Score = 145 bits (160), Expect = 2e-32
Identities = 106/123 (86%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| ||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 18492639 TTAACGACCCGTGGGCCTTCGACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 18492698
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 18492699 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 18492758
Query 125 GGC 127
|||
Sbjct 18492759 GGC 18492761
>seq39058
Length=1081
Score = 141 bits (156), Expect = 2e-31
Identities = 210/295 (71%), Gaps = 36/295 (12%)
Strand=Plus/Minus
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| |||||||||||||||||||| ||||||||| || ||| ||||||||||||
Sbjct 1081 TGTGGCTGATCATCCTCTCAGACCAGCTAAGGATCGTCGGCTTGGTAGGCCATTACCCCA 1022
Query 182 CCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTT 241
||||||| ||||||| | ||| |||||| || ||| || ||||
Sbjct 1021 CCAACTACCTAATCCTACGCGGGCTCATCC----CTG---GGCGATAA-------ATCTT 976
Query 242 TGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTC-CAGTGGTTATCCCCCTCCATCA 300
||||| ||| | || |||||||||| |||| || | ||||| || ||
Sbjct 975 TGGTCCGAAGACATCATCCGGTATTAGCAGTAATTTCTCACT-GTTATTCCGAACCCAAG 917
Query 301 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCG-TCAGCGAAGCAGCAAGCTGCT 359
||||| |||||| | |||| ||||||| ||||||| | || ||||| | ||
Sbjct 916 GGCAGATTCCCACGCGTTACGCACCCGTGCGCCACTAGATC--CGAAG-----ATCT--- 867
Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 866 ---------CGTTCGACTTGCATGTGTTAGGCATGCCGCCAGCGTTCGTTCTGAG 821
>seq16391
Length=686
Score = 131 bits (144), Expect = 4e-28
Identities = 89/100 (89%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 315 CATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCG 374
|||||||||||||||||||||||| || | ||| |||||||| || || | |||||||
Sbjct 5 CATTACTCACCCGTCCGCCACTCGCCACCCAAGGAGCAAGCTCCTCTGTGCTGCCGTTCG 64
Query 375 ACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
||||||||||||||||| ||||||||||||||||||||||
Sbjct 65 ACTTGCATGTGTTAGGCATGCCGCCAGCGTTCAATCTGAG 104
>seq145
Length=44152522
Score = 105 bits (116), Expect = 2e-20
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
||||| ||||||| | | ||||| |||| ||| | |||||||| ||||||||| | ||
Sbjct 19678091 ACCCGTGGGCCTTCGGCCTCCACGCTGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 19678150
Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 103
||||||||||||||||||||||||||||||||
Sbjct 19678151 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 19678183
>seq127
Length=60962716
Score = 104 bits (114), Expect = 6e-20
Identities = 86/105 (82%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79
||||| ||| |||| | || | || ||| ||||| |||||||||| ||| ||||||||
Sbjct 15335492 CCTTCCTCACTCACGAGATATTGTTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 15335433
Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
|||||||| ||||| |||||| || ||||||||||| |||||||
Sbjct 15335432 CTGCTGCCCCCCGTGGGAGTCCGGGTCGTGTCTCAGTCCCAGTGT 15335388
>seq38187
Length=1143
Score = 84.2 bits (92), Expect = 5e-14
Identities = 122/166 (73%), Gaps = 11/166 (7%)
Strand=Plus/Plus
Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTC- 309
||||| ||||||||||||| |||||| ||||| |||| | |||||||| ||
Sbjct 59 GACGT-ATGCGGTATTAGCTTAGGTTTCCCCAAGTTATTCCCCACACTCAGGCAGGTTAT 117
Query 310 CCAGACATTACTCACCCGTCCGCCACTCGTCA-GCGAAGCAGCAAGCTGCTTCCTGTTAC 368
||| |||||||||||| |||| ||| | |||| | | ||| |||| |
Sbjct 118 CCACGTGTTACTCACCCGTGCGCCGCTCTACTTGCGA--CCG-AAGTCGCTTTCG----- 169
Query 369 CGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|| ||||||||||||||||| || |||||||||||||| ||||||
Sbjct 170 CGCTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCATTCTGAG 215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1221908032896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |