Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq14921 437 2e-120 seq34962 385 1e-104 seq24564 275 2e-71 seq32520 242 9e-62 seq34591 205 2e-50 seq20801 187 6e-45 seq40246 167 6e-39 seq4536 158 3e-36 seq22 145 2e-32 seq39058 141 2e-31 seq16391 131 4e-28 seq145 105 2e-20 seq127 104 6e-20 seq38187 84.2 5e-14 >seq14921 Length=713 Score = 437 bits (484), Expect = 2e-120 Identities = 338/399 (85%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1 AGGCCTTCTTCACCCACGCGGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCC 60 Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCC 120 Query 137 TCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCC 196 |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 121 TCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCATTACCCCGCCAACTAGCTAATCC 180 Query 197 CATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT-GGTCTTGCGACGT 255 | | || ||||| || | | |||| | | |||||| |||| | | | || Sbjct 181 GACATCGGCTCATCTTATCGCGCGAGGTCTTGCGATCCCCCGCTTTCACCCGTAGGTCG- 239 Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC 315 |||||||||||||| |||||| |||||||||| | || |||||| |||| | Sbjct 240 TATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGATAAGGCAGATTCCGATGT 299 Query 316 ATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGA 375 ||| ||||||||||||||||||| || | ||| |||||||| || || | |||||||| Sbjct 300 ATTCCTCACCCGTCCGCCACTCGCCACCCAAGGAGCAAGCTCCTCTGTGCTGCCGTTCGA 359 Query 376 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||||||||||||||||| |||||| Sbjct 360 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCACTCTGAG 398 >seq34962 Length=1006 Score = 385 bits (426), Expect = 1e-104 Identities = 333/411 (81%), Gaps = 10/411 (2%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||||||||| | |||||||||| |||| |||||||||||||||||| Sbjct 590 TTTACAACCCGAAGGCCTTCTTCCTGCACGCGGCATTGCTGGATCAGGCTTGCGCCCATT 649 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 650 GTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 709 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 |||||||| ||||||||||||||||| |||||||| || |||| ||| ||||||| ||| Sbjct 710 GGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTGAGCCTTTACCCCACCA 769 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 |||| |||||| | | || ||| || | | |||||| | |||||||| |||| Sbjct 770 ACTACCTAATCTGACATCGGCCGCTCCAATCGCGCGAGGCCTTACGGTCCCCCGCTTTCA 829 Query 245 TCTTGCGACGTTATGCGGTATTAGC-CACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 || || |||||||||||||| || | |||| |||||||||| | | ||| Sbjct 830 TCCATAGATCGTATGCGGTATTAGCGCAGC-TTTCGCTGCGTTATCCCCCACGACTGGGC 888 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||| | |||||||||||||| |||||||||| ||||| ||| ||| Sbjct 889 ACGTTCCGATGCATTACTCACCCGTTCGCCACTCGT--------CAGCACCTTGCGGCCT 940 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||||| | || |||||||||||||||||||||| Sbjct 941 GTTACCGTTCGACTTGCATGTGTAAAGCATGCCGCCAGCGTTCAATCTGAG 991 >seq24564 Length=585 Score = 275 bits (304), Expect = 2e-71 Identities = 185/207 (89%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| | ||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 379 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 438 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 439 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATG 498 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| |||||||||||| ||| |||| ||||||| || Sbjct 499 TGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCACC 558 Query 184 AACTAGCTAATCCCATCTGGGTTCATC 210 ||||||||||||| | ||| ||||| Sbjct 559 AACTAGCTAATCCAACGCGGGCTCATC 585 >seq32520 Length=505 Score = 242 bits (268), Expect = 9e-62 Identities = 142/147 (97%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 359 CTTTACAACCCGAAGGCCTTCTTCACCCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 418 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 478 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTA 150 |||||| |||||||||||||||||||| Sbjct 479 TGGCTGATCATCCTCTCAGACCAGCTA 505 >seq34591 Length=1716 Score = 205 bits (226), Expect = 2e-50 Identities = 288/403 (71%), Gaps = 30/403 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | ||||||| | ||| |||||||||| |||||||| Sbjct 965 TTCACGACCCGTGGGCCTTCTACCTCAACGCGGCGTTGCTCCATCAGGCTTTCGCCCATT 1024 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||| ||||||||| ||||||||| | |||||||||||| ||||| Sbjct 1025 GCGGAAAATTCCCCACTACTGCCTCCCATAGGAGTCTTGGCCGTGTCTCAGTCATAGTGT 1084 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| | ||||||| ||||||||| ||| |||||| ||| |||| | || | | | Sbjct 1085 GGCTGATTATCCTCTGGGACCAGCTACTAATCATCGCCTTGGTAAGCCACTGCCTCACTA 1144 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 | ||||||||| || | | | ||| || ||| ||| ||| |||| Sbjct 1145 AGTAGCTAATCAGATGCGAGCCCCTCCTCGAG-CAGA---------TTCCTCCT-TTTG- 1192 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 ||| | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 1193 -CTTCTCAGCCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 1251 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | ||||||||||||||||||| |||| | || || Sbjct 1252 GGTTCTTACGCGTTACTCACCCGTCCGCCAC-------CGAA--AACA--------CCAC 1294 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407 || |||| ||||||||||||||| || ||||||||||||||| Sbjct 1295 TTTCCGTCTGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCA 1337 >seq20801 Length=610 Score = 187 bits (206), Expect = 6e-45 Identities = 158/192 (82%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| || |||| ||||| | |||||||| |||||| |||| ||| || |||| Sbjct 270 TTTACAACCCAGAGGGCCGTCTTCCTGCACGCGGCGTGGCTGGGTCAGACTT-CGTCCAT 212 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || |||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||| Sbjct 211 TGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTATCTCAGTGCCAGTG 152 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | | |||||||||| | ||| |||||| | || |||| ||| ||||| |||| Sbjct 151 TGGGGGATTCTCCTCTCAGAGCCCCTAAAGATCGTAGACTTGGTGAGCCGTTACCTCGCC 92 Query 184 AACTAGCTAATC 195 ||||| |||||| Sbjct 91 AACTATCTAATC 80 >seq40246 Length=368801 Score = 167 bits (184), Expect = 6e-39 Identities = 142/175 (81%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| |||||| || |||| ||| ||||| |||||||||| ||| |||||||| Sbjct 311039 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 311098 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| ||||| |||||| || |||||||||||| |||||||||||| |||||| Sbjct 311099 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 311158 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 |||||||||| | ||| | | || ||| ||| ||||| ||||||| ||||| Sbjct 311159 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAAT 311213 >seq4536 Length=917 Score = 158 bits (174), Expect = 3e-36 Identities = 150/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 3 ACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 ||||||| |||||| ||||||| || | ||||| || | || | |||||||| |||||| Sbjct 282 ACTTTACGACCCGAGGGCCTTCATCGTTCACGCAGCGTCGCATCGTCAGGCTTTCGCCCA 223 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 ||| | | |||| | ||||| ||||||||||||||||||| | |||||||||| ||||| Sbjct 222 TTGCGGATGATTCTCGACTGCAGCCTCCCGTAGGAGTCTGGGCAGTGTCTCAGTCCCAGT 163 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 || | ||||| |||||| || |||| || | |||| |||| ||||||||| | | Sbjct 162 GTTGGCGGTCAATCTCTCAACCCGCCTAGACGTCTTAGCCTTGGTGAGCCATTACCTCAC 103 Query 183 CAACTAGCTAAT 194 |||| |||| || Sbjct 102 CAACAAGCTGAT 91 >seq22 Length=40393389 Score = 145 bits (160), Expect = 2e-32 Identities = 106/123 (86%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 18492639 TTAACGACCCGTGGGCCTTCGACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 18492698 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 18492699 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 18492758 Query 125 GGC 127 ||| Sbjct 18492759 GGC 18492761 >seq39058 Length=1081 Score = 141 bits (156), Expect = 2e-31 Identities = 210/295 (71%), Gaps = 36/295 (12%) Strand=Plus/Minus Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||||||||||||||||| ||||||||| || ||| |||||||||||| Sbjct 1081 TGTGGCTGATCATCCTCTCAGACCAGCTAAGGATCGTCGGCTTGGTAGGCCATTACCCCA 1022 Query 182 CCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTT 241 ||||||| ||||||| | ||| |||||| || ||| || |||| Sbjct 1021 CCAACTACCTAATCCTACGCGGGCTCATCC----CTG---GGCGATAA-------ATCTT 976 Query 242 TGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTC-CAGTGGTTATCCCCCTCCATCA 300 ||||| ||| | || |||||||||| |||| || | ||||| || || Sbjct 975 TGGTCCGAAGACATCATCCGGTATTAGCAGTAATTTCTCACT-GTTATTCCGAACCCAAG 917 Query 301 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCG-TCAGCGAAGCAGCAAGCTGCT 359 ||||| |||||| | |||| ||||||| ||||||| | || ||||| | || Sbjct 916 GGCAGATTCCCACGCGTTACGCACCCGTGCGCCACTAGATC--CGAAG-----ATCT--- 867 Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 866 ---------CGTTCGACTTGCATGTGTTAGGCATGCCGCCAGCGTTCGTTCTGAG 821 >seq16391 Length=686 Score = 131 bits (144), Expect = 4e-28 Identities = 89/100 (89%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 315 CATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCG 374 |||||||||||||||||||||||| || | ||| |||||||| || || | ||||||| Sbjct 5 CATTACTCACCCGTCCGCCACTCGCCACCCAAGGAGCAAGCTCCTCTGTGCTGCCGTTCG 64 Query 375 ACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||| |||||||||||||||||||||| Sbjct 65 ACTTGCATGTGTTAGGCATGCCGCCAGCGTTCAATCTGAG 104 >seq145 Length=44152522 Score = 105 bits (116), Expect = 2e-20 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||| | | ||||| |||| ||| | |||||||| ||||||||| | || Sbjct 19678091 ACCCGTGGGCCTTCGGCCTCCACGCTGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 19678150 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 103 |||||||||||||||||||||||||||||||| Sbjct 19678151 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 19678183 >seq127 Length=60962716 Score = 104 bits (114), Expect = 6e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||| ||| |||| | || | || ||| ||||| |||||||||| ||| |||||||| Sbjct 15335492 CCTTCCTCACTCACGAGATATTGTTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 15335433 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 |||||||| ||||| |||||| || ||||||||||| ||||||| Sbjct 15335432 CTGCTGCCCCCCGTGGGAGTCCGGGTCGTGTCTCAGTCCCAGTGT 15335388 >seq38187 Length=1143 Score = 84.2 bits (92), Expect = 5e-14 Identities = 122/166 (73%), Gaps = 11/166 (7%) Strand=Plus/Plus Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTC- 309 ||||| ||||||||||||| |||||| ||||| |||| | |||||||| || Sbjct 59 GACGT-ATGCGGTATTAGCTTAGGTTTCCCCAAGTTATTCCCCACACTCAGGCAGGTTAT 117 Query 310 CCAGACATTACTCACCCGTCCGCCACTCGTCA-GCGAAGCAGCAAGCTGCTTCCTGTTAC 368 ||| |||||||||||| |||| ||| | |||| | | ||| |||| | Sbjct 118 CCACGTGTTACTCACCCGTGCGCCGCTCTACTTGCGA--CCG-AAGTCGCTTTCG----- 169 Query 369 CGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||||||||||||||||| || |||||||||||||| |||||| Sbjct 170 CGCTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCATTCTGAG 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221908032896