Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq103 309 6e-82 seq22 279 1e-72 seq147 277 3e-72 seq57 277 3e-72 seq96 221 2e-55 seq808 219 8e-55 seq1036 214 3e-53 seq344 210 4e-52 seq1 158 2e-36 seq43 152 1e-34 >seq103 Length=1049538 Score = 309 bits (342), Expect = 6e-82 Identities = 259/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCG---GCTTCT 76 || |||||||| | |||||||| |||| | || | | | |||| | |||||| Sbjct 762108 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTAGTCCT-TCGCAGCTAGCTTCT 762166 Query 77 TAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 |||||||||||| | || || | | ||||||||||||||||||||||||||||||||| Sbjct 762167 TAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 762226 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 762227 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 762286 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 ||| ||||| |||||||||| | ||||| ||||| |||||||||| |||||||||| Sbjct 762287 ACCGACAGGTCCGGGTAATCTT-TGAAACTTCATCGTGATGGGGATAGATCATTGCAATT 762345 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 762346 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 762405 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 762406 CCTGCCCTTTGTA 762418 >seq22 Length=40393389 Score = 279 bits (308), Expect = 1e-72 Identities = 220/260 (85%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | || || | | | | ||||||||||||||||||||||| Sbjct 33416363 GCTTCTTAGAGGGACTATGGCCTTTTAGGCCACGAACGTTTGAGGCAATAACAGGTCTGT 33416304 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||| ||||||||| | | |||||||| || Sbjct 33416303 GATGCCCTTAGATGTTCTGGGCCGCACGCACGCTACACTAATGTATTCAACGAGTCTATA 33416244 Query 190 ACCTTGGCCGGAAGGT-CTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||||| ||| |||| | |||||||||| | ||| | ||||| |||||||||| ||| Sbjct 33416243 GCCTTGACCGACAGGTTCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCAT 33416185 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| Sbjct 33416184 TGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGA 33416125 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 33416124 CTACGTCCCTGCCCTTTGTA 33416105 >seq147 Length=783512 Score = 277 bits (306), Expect = 3e-72 Identities = 252/313 (81%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCG---GCTTCT 76 || |||||||| | |||||||| |||| | || | | | |||| | |||||| Sbjct 699567 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTAGTCCT-TCGCAGCTAGCTTCT 699625 Query 77 TAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 |||||||||||| | || || | | ||||||||||||||||||||||||||| ||||| Sbjct 699626 TAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTTATGCC 699685 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || |||||| Sbjct 699686 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAACCTTG 699745 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 ||| |||| | |||||||| | ||||| ||||| ||||| |||| |||||||||| Sbjct 699746 ACCGATCGGTCCGAGTAATCTT-TGAAACTTAATCGTGATGGGGTTAGATCATTGCAATT 699804 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||| |||||| ||||||||||||| ||||||||| | |||||| |||||| Sbjct 699805 GTTGGTCTTCAATAAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCACGTTGACTACGTC 699864 Query 316 CCTGCCCTTTGTA 328 |||||||||| || Sbjct 699865 CCTGCCCTTTATA 699877 >seq57 Length=33024243 Score = 277 bits (306), Expect = 3e-72 Identities = 252/313 (81%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCG---GCTTCT 76 || |||||||| | |||||||| |||| | || | | | |||| | |||||| Sbjct 27222208 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTAGTCCT-TCGCAGCTAGCTTCT 27222266 Query 77 TAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 |||||||||||| | || || | | ||||||||||||||||||||||||||| ||||| Sbjct 27222267 TAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTTATGCC 27222326 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || |||||| Sbjct 27222327 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAACCTTG 27222386 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 ||| |||| | |||||||| | ||||| ||||| ||||| |||| |||||||||| Sbjct 27222387 ACCGATCGGTCCGAGTAATCTT-TGAAACTTAATCGTGATGGGGTTAGATCATTGCAATT 27222445 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||| |||||| ||||||||||||| ||||||||| | |||||| |||||| Sbjct 27222446 GTTGGTCTTCAATAAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCACGTTGACTACGTC 27222505 Query 316 CCTGCCCTTTGTA 328 |||||||||| || Sbjct 27222506 CCTGCCCTTTATA 27222518 >seq96 Length=52461754 Score = 221 bits (244), Expect = 2e-55 Identities = 165/192 (86%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || ||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 45403858 ATCCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAG 45403799 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||| ||| ||||| |||||||||| | ||||| ||||| |||||||||| ||||| Sbjct 45403798 CCTTGACCGATAGGTCCGGGTAATCTT-TGAAACTTCATCGTGATGGGGATAGATCATTG 45403740 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| | Sbjct 45403739 CAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACT 45403680 Query 311 ACGTCCCTGCCC 322 |||||||||||| Sbjct 45403679 ACGTCCCTGCCC 45403668 Score = 107 bits (118), Expect = 4e-21 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 240 ATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 ||||| |||||||||| || ||||||||||||||| ||||||||||||| ||||| ||| Sbjct 39586736 ATAGATCATTGCAATTGTTAGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATTAGC 39586677 Query 300 ACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | |||||| ||||||| || |||||||| Sbjct 39586676 TCCCGTTGACTACGTCCTTGTCCTTTGTA 39586648 >seq808 Length=9131 Score = 219 bits (242), Expect = 8e-55 Identities = 207/259 (80%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||||||||| | || |||||||||||||||||||||||||||||||| Sbjct 6074 CTTCTTAGAGGGACTATCGATGTGCAGTCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 6133 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC- 189 |||||||||||||||||||||||||||||||||||| || || |||||||| ||| Sbjct 6134 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAATGCTAGGTTCAACGAGT--ATCG 6191 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||| || ||| |||| ||||||| | ||| || |||||| ||| | | || Sbjct 6192 GACTTGGTCGAGAGGCCTGGTTAATCTTTTGAAATCCTAGCGTGCTTGGGCTTGCCTCTT 6251 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||| || | | ||||||||||| ||||||| ||| ||||||| | || | ||| Sbjct 6252 GCAACTAGAG-GCACCAACGAGGAATTCCTAGTAGACGCAGGTCATCAACCTGCATCGAT 6310 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 6311 TACGTCCCTGCCCTTTGTA 6329 >seq1036 Length=7046 Score = 214 bits (236), Expect = 3e-53 Identities = 206/259 (80%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | || | || | ||||| |||||||||||||||| Sbjct 2686 CTTCTTAGAGGGACAAGTGGCGTTTAGTCACACGA-GATTGAG-CAATAACAGGTCTGTG 2629 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATC 189 |||||||||||||||| ||||||||||||||||||||||| || || || || || | Sbjct 2628 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTCTCTCC 2569 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||| |||| | |||||| | | || ||| ||||||| ||||| | | || Sbjct 2568 TCCTGATCCGTAAGGACCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTT 2509 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | |||||||||| || |||||||||| ||||| ||| ||||||||| Sbjct 2508 GCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGAT 2449 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 2448 TACGTCCCTGCCCTTTGTA 2430 >seq344 Length=88605 Score = 210 bits (232), Expect = 4e-52 Identities = 236/312 (76%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGG--GTCGCCGGCTTCTT 77 || |||||||| |||||||||| |||| | || | | | || | ||||||| Sbjct 76899 GAACGAGACCTCAACCTGCTAACTAGCTATGCGGAGGTAGTCCTTCGTAGATAGCTTCTT 76840 Query 78 AGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136 |||||| |||| | || | || | |||| ||||||||||||||| || |||||||||| Sbjct 76839 AGAGGGGCTATGGCCTTCTAGGTCACGGAATTTTGAGGCAATAACAAGTTTGTGATGCCC 76780 Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||| | ||||||| || | |||||| || | ||||||| || ||||| Sbjct 76779 TTAGATGTCCAGGGCCGCTTGCACACTACACGGATGTATTTAACGAGTCTATAGCCTTGA 76720 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||| ||||||||| | ||| | ||||| |||||||| | |||| ||||| Sbjct 76719 CCGACGGGTTCCGGTAATCTT-TGAAATTTCATCGTGATGGGGATAAATCATTTCAATTG 76661 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 || ||||||||||||||| ||||||||||||| ||||||||| | | |||| ||||||| Sbjct 76660 TTTGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCACATTGACTACGTCC 76601 Query 317 CTGCCCTTTGTA 328 || ||||||||| Sbjct 76600 CTACCCTTTGTA 76589 >seq1 Length=34941034 Score = 158 bits (174), Expect = 2e-36 Identities = 195/263 (74%), Gaps = 8/263 (3%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | || || | | |||||||||||| |||||| || Sbjct 5531306 GCTTCTTAGAGGGACTATGGCCTTTTAGGTCACGCAAGTTTGAGGCAGGTGCAGGTCCGT 5531365 Query 130 GATGCCCTTAGATGTTCTGGGC----CGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||| ||||||||| | | ||| |||||| || ||||||||| | |||| ||| Sbjct 5531366 GATTCCCTTAGATCATTTAGGCGCGCCGCACGAGCTCTACACTGATGTATTCAACAAGTC 5531425 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 ||| || ||| || ||| ||||| || | | ||| | ||||| | |||||||| Sbjct 5531426 CATAACATTGATCGATAGGCACGGGTACTCAT-TGAAATTTCATCGTGATAGGGATAGAT 5531484 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||| ||||| ||| ||||||||||||||| ||||| ||| ||| | ||||| | || || Sbjct 5531485 CATTACAATTGTTGGTCTTCAACGAGGAATTCCTAGAAAGTGCGAGCCATCATCTCGTGT 5531544 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| | ||| |||||||||||| Sbjct 5531545 TGACT--GTCTCTGCCCTTTGTA 5531565 >seq43 Length=26577699 Score = 152 bits (168), Expect = 1e-34 Identities = 191/259 (74%), Gaps = 11/259 (4%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | || || | ||| ||||||||||||||||||||| | | Sbjct 21126240 GCTTCTTAGAGGGACTATGGCCTGTTAGGCCATGAAAGTTTGAGGCAATAACAGGTATAT 21126181 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 || ||||||| |||||| | | | |||| | | | | |||||||| || Sbjct 21126180 AATACCCTTAGGTGTTCTAG------CAGGAGCTATAATAATGTATTCAACGAGTGTATA 21126127 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||| || ||||| |||||||||| | ||| | ||||| |||||||| | |||| Sbjct 21126126 GCCTTGACCAACAGGTCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAAATCATT 21126068 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| |||||| | || ||| |||| ||||| | ||||||| | |||| | Sbjct 21126067 GCAATTGTTGGTCTTCACCAAGAAATTCCTAATAAGCACCAGTCATCATCTTGCGT---T 21126011 Query 310 TACGTCCCTGCCCTTTGTA 328 || | ||||||||||||| Sbjct 21126010 AACATACCTGCCCTTTGTA 21125992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946818789888