Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq103 309 6e-82
seq22 279 1e-72
seq147 277 3e-72
seq57 277 3e-72
seq96 221 2e-55
seq808 219 8e-55
seq1036 214 3e-53
seq344 210 4e-52
seq1 158 2e-36
seq43 152 1e-34
>seq103
Length=1049538
Score = 309 bits (342), Expect = 6e-82
Identities = 259/313 (83%), Gaps = 6/313 (2%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCG---GCTTCT 76
|| |||||||| | |||||||| |||| | || | | | |||| | ||||||
Sbjct 762108 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTAGTCCT-TCGCAGCTAGCTTCT 762166
Query 77 TAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135
|||||||||||| | || || | | |||||||||||||||||||||||||||||||||
Sbjct 762167 TAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 762226
Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195
||||||||||||||||||||||||||||||||||| | |||||||| || |||||
Sbjct 762227 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 762286
Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255
||| ||||| |||||||||| | ||||| ||||| |||||||||| ||||||||||
Sbjct 762287 ACCGACAGGTCCGGGTAATCTT-TGAAACTTCATCGTGATGGGGATAGATCATTGCAATT 762345
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||
Sbjct 762346 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 762405
Query 316 CCTGCCCTTTGTA 328
|||||||||||||
Sbjct 762406 CCTGCCCTTTGTA 762418
>seq22
Length=40393389
Score = 279 bits (308), Expect = 1e-72
Identities = 220/260 (85%), Gaps = 3/260 (1%)
Strand=Plus/Minus
Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||| | || || | | | | |||||||||||||||||||||||
Sbjct 33416363 GCTTCTTAGAGGGACTATGGCCTTTTAGGCCACGAACGTTTGAGGCAATAACAGGTCTGT 33416304
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||||||||||||||||||||||||||| ||||||||| | | |||||||| ||
Sbjct 33416303 GATGCCCTTAGATGTTCTGGGCCGCACGCACGCTACACTAATGTATTCAACGAGTCTATA 33416244
Query 190 ACCTTGGCCGGAAGGT-CTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248
||||| ||| |||| | |||||||||| | ||| | ||||| |||||||||| |||
Sbjct 33416243 GCCTTGACCGACAGGTTCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCAT 33416185
Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308
||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct 33416184 TGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGA 33416125
Query 309 TTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||
Sbjct 33416124 CTACGTCCCTGCCCTTTGTA 33416105
>seq147
Length=783512
Score = 277 bits (306), Expect = 3e-72
Identities = 252/313 (81%), Gaps = 6/313 (2%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCG---GCTTCT 76
|| |||||||| | |||||||| |||| | || | | | |||| | ||||||
Sbjct 699567 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTAGTCCT-TCGCAGCTAGCTTCT 699625
Query 77 TAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135
|||||||||||| | || || | | ||||||||||||||||||||||||||| |||||
Sbjct 699626 TAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTTATGCC 699685
Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195
||||||||||||||||||||||||||||||||||| | |||||||| || ||||||
Sbjct 699686 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAACCTTG 699745
Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255
||| |||| | |||||||| | ||||| ||||| ||||| |||| ||||||||||
Sbjct 699746 ACCGATCGGTCCGAGTAATCTT-TGAAACTTAATCGTGATGGGGTTAGATCATTGCAATT 699804
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
||| ||||||| |||||| ||||||||||||| ||||||||| | |||||| ||||||
Sbjct 699805 GTTGGTCTTCAATAAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCACGTTGACTACGTC 699864
Query 316 CCTGCCCTTTGTA 328
|||||||||| ||
Sbjct 699865 CCTGCCCTTTATA 699877
>seq57
Length=33024243
Score = 277 bits (306), Expect = 3e-72
Identities = 252/313 (81%), Gaps = 6/313 (2%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCG---GCTTCT 76
|| |||||||| | |||||||| |||| | || | | | |||| | ||||||
Sbjct 27222208 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTAGTCCT-TCGCAGCTAGCTTCT 27222266
Query 77 TAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135
|||||||||||| | || || | | ||||||||||||||||||||||||||| |||||
Sbjct 27222267 TAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTTATGCC 27222326
Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195
||||||||||||||||||||||||||||||||||| | |||||||| || ||||||
Sbjct 27222327 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAACCTTG 27222386
Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255
||| |||| | |||||||| | ||||| ||||| ||||| |||| ||||||||||
Sbjct 27222387 ACCGATCGGTCCGAGTAATCTT-TGAAACTTAATCGTGATGGGGTTAGATCATTGCAATT 27222445
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
||| ||||||| |||||| ||||||||||||| ||||||||| | |||||| ||||||
Sbjct 27222446 GTTGGTCTTCAATAAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCACGTTGACTACGTC 27222505
Query 316 CCTGCCCTTTGTA 328
|||||||||| ||
Sbjct 27222506 CCTGCCCTTTATA 27222518
>seq96
Length=52461754
Score = 221 bits (244), Expect = 2e-55
Identities = 165/192 (86%), Gaps = 1/192 (1%)
Strand=Plus/Minus
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|| ||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 45403858 ATCCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAG 45403799
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||||| ||| ||||| |||||||||| | ||||| ||||| |||||||||| |||||
Sbjct 45403798 CCTTGACCGATAGGTCCGGGTAATCTT-TGAAACTTCATCGTGATGGGGATAGATCATTG 45403740
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |
Sbjct 45403739 CAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACT 45403680
Query 311 ACGTCCCTGCCC 322
||||||||||||
Sbjct 45403679 ACGTCCCTGCCC 45403668
Score = 107 bits (118), Expect = 4e-21
Identities = 77/89 (87%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 240 ATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299
||||| |||||||||| || ||||||||||||||| ||||||||||||| ||||| |||
Sbjct 39586736 ATAGATCATTGCAATTGTTAGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATTAGC 39586677
Query 300 ACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| |||||| ||||||| || ||||||||
Sbjct 39586676 TCCCGTTGACTACGTCCTTGTCCTTTGTA 39586648
>seq808
Length=9131
Score = 219 bits (242), Expect = 8e-55
Identities = 207/259 (80%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
||||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 6074 CTTCTTAGAGGGACTATCGATGTGCAGTCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 6133
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC- 189
|||||||||||||||||||||||||||||||||||| || || |||||||| |||
Sbjct 6134 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAATGCTAGGTTCAACGAGT--ATCG 6191
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||||| || ||| |||| ||||||| | ||| || |||||| ||| | | ||
Sbjct 6192 GACTTGGTCGAGAGGCCTGGTTAATCTTTTGAAATCCTAGCGTGCTTGGGCTTGCCTCTT 6251
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
|||| || | | ||||||||||| ||||||| ||| ||||||| | || | |||
Sbjct 6252 GCAACTAGAG-GCACCAACGAGGAATTCCTAGTAGACGCAGGTCATCAACCTGCATCGAT 6310
Query 310 TACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||
Sbjct 6311 TACGTCCCTGCCCTTTGTA 6329
>seq1036
Length=7046
Score = 214 bits (236), Expect = 3e-53
Identities = 206/259 (80%), Gaps = 4/259 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | || | || | ||||| ||||||||||||||||
Sbjct 2686 CTTCTTAGAGGGACAAGTGGCGTTTAGTCACACGA-GATTGAG-CAATAACAGGTCTGTG 2629
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATC 189
|||||||||||||||| ||||||||||||||||||||||| || || || || || |
Sbjct 2628 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTCTCTCC 2569
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||| ||| |||| | |||||| | | || ||| ||||||| ||||| | | ||
Sbjct 2568 TCCTGATCCGTAAGGACCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTT 2509
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
||||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||
Sbjct 2508 GCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGAT 2449
Query 310 TACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||
Sbjct 2448 TACGTCCCTGCCCTTTGTA 2430
>seq344
Length=88605
Score = 210 bits (232), Expect = 4e-52
Identities = 236/312 (76%), Gaps = 4/312 (1%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGG--GTCGCCGGCTTCTT 77
|| |||||||| |||||||||| |||| | || | | | || | |||||||
Sbjct 76899 GAACGAGACCTCAACCTGCTAACTAGCTATGCGGAGGTAGTCCTTCGTAGATAGCTTCTT 76840
Query 78 AGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136
|||||| |||| | || | || | |||| ||||||||||||||| || ||||||||||
Sbjct 76839 AGAGGGGCTATGGCCTTCTAGGTCACGGAATTTTGAGGCAATAACAAGTTTGTGATGCCC 76780
Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196
|||||||| | ||||||| || | |||||| || | ||||||| || |||||
Sbjct 76779 TTAGATGTCCAGGGCCGCTTGCACACTACACGGATGTATTTAACGAGTCTATAGCCTTGA 76720
Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256
||| ||| ||||||||| | ||| | ||||| |||||||| | |||| |||||
Sbjct 76719 CCGACGGGTTCCGGTAATCTT-TGAAATTTCATCGTGATGGGGATAAATCATTTCAATTG 76661
Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316
|| ||||||||||||||| ||||||||||||| ||||||||| | | |||| |||||||
Sbjct 76660 TTTGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCACATTGACTACGTCC 76601
Query 317 CTGCCCTTTGTA 328
|| |||||||||
Sbjct 76600 CTACCCTTTGTA 76589
>seq1
Length=34941034
Score = 158 bits (174), Expect = 2e-36
Identities = 195/263 (74%), Gaps = 8/263 (3%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||| | || || | | |||||||||||| |||||| ||
Sbjct 5531306 GCTTCTTAGAGGGACTATGGCCTTTTAGGTCACGCAAGTTTGAGGCAGGTGCAGGTCCGT 5531365
Query 130 GATGCCCTTAGATGTTCTGGGC----CGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
||| ||||||||| | | ||| |||||| || ||||||||| | |||| |||
Sbjct 5531366 GATTCCCTTAGATCATTTAGGCGCGCCGCACGAGCTCTACACTGATGTATTCAACAAGTC 5531425
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
||| || ||| || ||| ||||| || | | ||| | ||||| | ||||||||
Sbjct 5531426 CATAACATTGATCGATAGGCACGGGTACTCAT-TGAAATTTCATCGTGATAGGGATAGAT 5531484
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||| ||||| ||| ||||||||||||||| ||||| ||| ||| | ||||| | || ||
Sbjct 5531485 CATTACAATTGTTGGTCTTCAACGAGGAATTCCTAGAAAGTGCGAGCCATCATCTCGTGT 5531544
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
||| | ||| ||||||||||||
Sbjct 5531545 TGACT--GTCTCTGCCCTTTGTA 5531565
>seq43
Length=26577699
Score = 152 bits (168), Expect = 1e-34
Identities = 191/259 (74%), Gaps = 11/259 (4%)
Strand=Plus/Minus
Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||| | || || | ||| ||||||||||||||||||||| | |
Sbjct 21126240 GCTTCTTAGAGGGACTATGGCCTGTTAGGCCATGAAAGTTTGAGGCAATAACAGGTATAT 21126181
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
|| ||||||| |||||| | | | |||| | | | | |||||||| ||
Sbjct 21126180 AATACCCTTAGGTGTTCTAG------CAGGAGCTATAATAATGTATTCAACGAGTGTATA 21126127
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||||| || ||||| |||||||||| | ||| | ||||| |||||||| | ||||
Sbjct 21126126 GCCTTGACCAACAGGTCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAAATCATT 21126068
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
|||||| ||| |||||| | || ||| |||| ||||| | ||||||| | |||| |
Sbjct 21126067 GCAATTGTTGGTCTTCACCAAGAAATTCCTAATAAGCACCAGTCATCATCTTGCGT---T 21126011
Query 310 TACGTCCCTGCCCTTTGTA 328
|| | |||||||||||||
Sbjct 21126010 AACATACCTGCCCTTTGTA 21125992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946818789888
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