Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq20801 239 1e-60
seq34962 199 8e-49
seq24564 190 4e-46
seq14921 172 1e-40
seq32520 158 3e-36
seq39498 154 3e-35
seq40246 120 6e-25
seq22 107 4e-21
seq4536 100 6e-19
seq127 80.6 6e-13
seq145 78.8 2e-12
>seq20801
Length=610
Score = 239 bits (264), Expect = 1e-60
Identities = 242/313 (77%), Gaps = 3/313 (1%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
||||||||||||| ||||||||| |||||||| ||||| ||| | || | |
Sbjct 356 GGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCTGCTGGTACCGTCAACTTTCCTCGCAG 297
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
|| |||| ||||| ||||| ||||||||| || || || || |||| |||||
Sbjct 296 GGTC--TTTTCTTCCCAGTCAAAAGCAGTTTACAACCCAGAGGGCCGTCTTCCTGCACGC 239
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| ||||||| ||||||| |||||||||| |||||||||| |||||||||||||||||
Sbjct 238 GGCGTGGCTGGGTCAGACT-TCGTCCATTGCCCAATATTCCCTACTGCTGCCTCCCGTAG 180
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||| ||||||| ||| ||||||||| |||||||||| |||||| ||
Sbjct 179 GAGTCTGGCCCGTATCTCAGTGCCAGTGTGGGGGATTCTCCTCTCAGAGCCCCTAAAGAT 120
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300
||||| || |||| ||||||||| |||| |||| ||||| |||||| ||||||
Sbjct 119 CGTAGACTTGGTGAGCCGTTACCTCGCCAACTATCTAATCTTACGCATGCCCATCTCTAT 60
Query 301 CCGATGAATCTTT 313
||||| |||||||
Sbjct 59 CCGATAAATCTTT 47
>seq34962
Length=1006
Score = 199 bits (220), Expect = 8e-49
Identities = 220/287 (77%), Gaps = 11/287 (4%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACA--AGCTCCCACAC 58
||||||||||||| ||||||||| ||||||||| || ||||| || ||| ||||
Sbjct 496 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTACCGTCATTAGC-CCCAGGT 554
Query 59 GTGGA----AG--GTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATC 112
| | || |||| |||| | | ||||| ||||||||| ||| || ||||| ||
Sbjct 555 ATTAACCAGAGCCGTTTCGTTCCGT-ACAAAAGCAGTTTACAACCCGAAGG-CCTTCTTC 612
Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172
|| ||||| | | ||||| |||| || || |||||| |||| ||||| ||||||||||
Sbjct 613 CTGCACGCGGCATTGCTGGATCAGGCTTGCGCCCATTGTCCAAAATTCCCCACTGCTGCC 672
Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232
|||||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| |
Sbjct 673 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAG 732
Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
||| ||||| |||| |||| ||| ||||||| || ||||||||||
Sbjct 733 CTACAGATCGTCGGCTTGGTGAGCCTTTACCCCACCAACTACCTAAT 779
>seq24564
Length=585
Score = 190 bits (210), Expect = 4e-46
Identities = 166/205 (81%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141
||||| ||||||| || ||| |||||||| |||||| | ||||||| |||| ||
Sbjct 373 AAAGAGCTTTACAACCC-TAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTG 431
Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201
|| |||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 432 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGT 491
Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261
||||||||| || | |||||||||| | |||| ||||| | || ||| |||| |||
Sbjct 492 CCCAATGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTA 551
Query 262 CCCCGCCTACTACCTAATGGAACGC 286
|||| || |||| ||||| |||||
Sbjct 552 CCCCACCAACTAGCTAATCCAACGC 576
>seq14921
Length=713
Score = 172 bits (190), Expect = 1e-40
Identities = 143/175 (82%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
||||| || ||||| | ||||||| |||| || || |||||| |||||||||| ||
Sbjct 4 CCTTCTTCACCCACGCGGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCA 63
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||||||||||||||| |||||||||||||||||||| ||||| || | ||||||
Sbjct 64 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCT 123
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
|||| | ||| ||||| | || |||||||| |||||||||| |||| |||||
Sbjct 124 CAGACCAGCTACGGATCGTCGCCTTGGTGGGCCATTACCCCGCCAACTAGCTAAT 178
>seq32520
Length=505
Score = 158 bits (174), Expect = 3e-36
Identities = 177/234 (76%), Gaps = 7/234 (3%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACAT-----ACAAGCTCCCA 55
||||||||||||| ||||||||| ||||||||| || ||||| |||| | |
Sbjct 266 GGCTGCTGGCACGAAGTTAGCCGGTGCTTATTCTTACGGTACCGTCAGAACAATCGGGTA 325
Query 56 CACGTGGAAGG-TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114
|| | |||| || || | ||||| ||||||| ||| || ||||| ||
Sbjct 326 TTAACCGACTGCTTTTCTTTCCCAACAAAAGGGCTTTACAACCCGAAGG-CCTTCTTCAC 384
Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174
||||| | ||||||| |||| || || |||||| |||||||||| ||||||||||||
Sbjct 385 CCACGCGGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 444
Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
|||||||||| |||||||||||||||||||| ||||| || | ||||||||||
Sbjct 445 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAGA 498
>seq39498
Length=1033
Score = 154 bits (170), Expect = 3e-35
Identities = 137/171 (80%), Gaps = 8/171 (5%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGC----TCCCAC 56
||||||||||||||||||||||| ||||||||||| |||| ||||| | |
Sbjct 867 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCATTGAGTACCGTCAAGCAAGTTAGAAA 926
Query 57 ACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTC 116
|| || | ||| ||||| |||||||||||||||||||| || ||||||||||| |
Sbjct 927 ACCTGCA----TTTCTTCCCCAATAAAAGAAGTTTACAATCCAGAGGACCTTCATCCTCC 982
Query 117 ACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTG 167
|||| | ||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 983 ACGCGGCATGGCTGGTTCAGACTTGCGTCCATTGACCAATATTCCTTACTG 1033
>seq40246
Length=368801
Score = 120 bits (132), Expect = 6e-25
Identities = 161/223 (72%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 82 AAAGAAGTTTACAATCCGTAGAACC-TTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
||||| ||||||| | | | ||| ||| || |||||| | | ||||| || | ||
Sbjct 311015 AAAGAGCTTTACAAGCGGCATTACCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTT 311074
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| |||| ||||| |||||||||| ||||| ||||| || |||||||||||
Sbjct 311075 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 311134
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
| ||| ||||| || | ||| ||| | ||| |||| | |||| ||| ||| ||
Sbjct 311135 TCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 311194
Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303
||| || |||||||||| ||||| | |||| ||| ||
Sbjct 311195 ACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCG 311237
>seq22
Length=40393389
Score = 107 bits (118), Expect = 4e-21
Identities = 103/131 (79%), Gaps = 1/131 (1%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| || | |||| | ||||| ||| ||||| | | ||| |||| ||
Sbjct 18492631 AAAAGAAGTTAACGACCCGTGGG-CCTTCGACCTCCACGCGGCATTGCTCCGTCAGGCTT 18492689
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 18492690 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 18492749
Query 201 TTCCAATGTGG 211
| ||| |||||
Sbjct 18492750 TCCCAGTGTGG 18492760
>seq4536
Length=917
Score = 100 bits (110), Expect = 6e-19
Identities = 195/284 (69%), Gaps = 7/284 (2%)
Strand=Plus/Minus
Query 2 GCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCAC-ACGT 60
|||||||||||||||||||||| ||||| || | ||||| ||| | | | ||
Sbjct 373 GCTGCTGGCACGGAGTTAGCCGGTGCTTCTTTACTTGGTACCCTCAAATTTGAATGATGT 314
Query 61 --GGA---AGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTT 115
| | | | || ||||| |||||| ||||| | ||| || |||||||| ||
Sbjct 313 TAGCATCCATCTCTTGTTCCCAAGCGAAAGAACTTTACGACCCG-AGGGCCTTCATCGTT 255
Query 116 CACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCC 175
||||| | | || |||| || ||| |||||| | |||| ||||| ||||||
Sbjct 254 CACGCAGCGTCGCATCGTCAGGCTTTCGCCCATTGCGGATGATTCTCGACTGCAGCCTCC 195
Query 176 CGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTA 235
||||||||| ||| | |||||||||| ||| ||| || | | |||||| | ||||
Sbjct 194 CGTAGGAGTCTGGGCAGTGTCTCAGTCCCAGTGTTGGCGGTCAATCTCTCAACCCGCCTA 135
Query 236 TCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| || ||| || |||| ||| ||||| | || || | || ||
Sbjct 134 GACGTCTTAGCCTTGGTGAGCCATTACCTCACCAACAAGCTGAT 91
>seq127
Length=60962716
Score = 80.6 bits (88), Expect = 6e-13
Identities = 96/129 (74%), Gaps = 1/129 (1%)
Strand=Plus/Minus
Query 82 AAAGAAGTTTACAATCCGTAGAACC-TTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
||| | |||||||| | | | ||| ||| || ||||| | | | ||| || | ||
Sbjct 15335516 AAAAAGGTTTACAAGCGGCATTACCCTTCCTCACTCACGAGATATTGTTGGATCGGGCTT 15335457
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| |||| ||||| |||||||||| ||||| ||||| || ||||||||||
Sbjct 15335456 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGTCGTGTCTCAG 15335397
Query 201 TTCCAATGT 209
| ||| |||
Sbjct 15335396 TCCCAGTGT 15335388
>seq145
Length=44152522
Score = 78.8 bits (86), Expect = 2e-12
Identities = 83/108 (77%), Gaps = 1/108 (1%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| | | |||| | ||||| ||| |||||| | | ||| |||| ||
Sbjct 19678077 AAAAGAAGTTCATGACCCGTGGG-CCTTCGGCCTCCACGCTGCATTGCTCCGTCAGGCTT 19678135
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGG 188
||| |||||| || ||||| |||||||||||||||||||||| |||
Sbjct 19678136 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 19678183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068369850752
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