Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq20801 239 1e-60 seq34962 199 8e-49 seq24564 190 4e-46 seq14921 172 1e-40 seq32520 158 3e-36 seq39498 154 3e-35 seq40246 120 6e-25 seq22 107 4e-21 seq4536 100 6e-19 seq127 80.6 6e-13 seq145 78.8 2e-12 >seq20801 Length=610 Score = 239 bits (264), Expect = 1e-60 Identities = 242/313 (77%), Gaps = 3/313 (1%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||||||| ||||| ||| | || | | Sbjct 356 GGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCTGCTGGTACCGTCAACTTTCCTCGCAG 297 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || |||| ||||| ||||| ||||||||| || || || || |||| ||||| Sbjct 296 GGTC--TTTTCTTCCCAGTCAAAAGCAGTTTACAACCCAGAGGGCCGTCTTCCTGCACGC 239 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||| Sbjct 238 GGCGTGGCTGGGTCAGACT-TCGTCCATTGCCCAATATTCCCTACTGCTGCCTCCCGTAG 180 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||| ||||||| ||| ||||||||| |||||||||| |||||| || Sbjct 179 GAGTCTGGCCCGTATCTCAGTGCCAGTGTGGGGGATTCTCCTCTCAGAGCCCCTAAAGAT 120 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||||| || |||| ||||||||| |||| |||| ||||| |||||| |||||| Sbjct 119 CGTAGACTTGGTGAGCCGTTACCTCGCCAACTATCTAATCTTACGCATGCCCATCTCTAT 60 Query 301 CCGATGAATCTTT 313 ||||| ||||||| Sbjct 59 CCGATAAATCTTT 47 >seq34962 Length=1006 Score = 199 bits (220), Expect = 8e-49 Identities = 220/287 (77%), Gaps = 11/287 (4%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACA--AGCTCCCACAC 58 ||||||||||||| ||||||||| ||||||||| || ||||| || ||| |||| Sbjct 496 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTACCGTCATTAGC-CCCAGGT 554 Query 59 GTGGA----AG--GTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATC 112 | | || |||| |||| | | ||||| ||||||||| ||| || ||||| || Sbjct 555 ATTAACCAGAGCCGTTTCGTTCCGT-ACAAAAGCAGTTTACAACCCGAAGG-CCTTCTTC 612 Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172 || ||||| | | ||||| |||| || || |||||| |||| ||||| |||||||||| Sbjct 613 CTGCACGCGGCATTGCTGGATCAGGCTTGCGCCCATTGTCCAAAATTCCCCACTGCTGCC 672 Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232 |||||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| | Sbjct 673 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAG 732 Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||| |||| |||| ||| ||||||| || |||||||||| Sbjct 733 CTACAGATCGTCGGCTTGGTGAGCCTTTACCCCACCAACTACCTAAT 779 >seq24564 Length=585 Score = 190 bits (210), Expect = 4e-46 Identities = 166/205 (81%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||| ||||||| || ||| |||||||| |||||| | ||||||| |||| || Sbjct 373 AAAGAGCTTTACAACCC-TAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTG 431 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 432 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGT 491 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 ||||||||| || | |||||||||| | |||| ||||| | || ||| |||| ||| Sbjct 492 CCCAATGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTA 551 Query 262 CCCCGCCTACTACCTAATGGAACGC 286 |||| || |||| ||||| ||||| Sbjct 552 CCCCACCAACTAGCTAATCCAACGC 576 >seq14921 Length=713 Score = 172 bits (190), Expect = 1e-40 Identities = 143/175 (82%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || ||||| | ||||||| |||| || || |||||| |||||||||| || Sbjct 4 CCTTCTTCACCCACGCGGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCA 63 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||||||||||||||| |||||||||||||||||||| ||||| || | |||||| Sbjct 64 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCT 123 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 |||| | ||| ||||| | || |||||||| |||||||||| |||| ||||| Sbjct 124 CAGACCAGCTACGGATCGTCGCCTTGGTGGGCCATTACCCCGCCAACTAGCTAAT 178 >seq32520 Length=505 Score = 158 bits (174), Expect = 3e-36 Identities = 177/234 (76%), Gaps = 7/234 (3%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACAT-----ACAAGCTCCCA 55 ||||||||||||| ||||||||| ||||||||| || ||||| |||| | | Sbjct 266 GGCTGCTGGCACGAAGTTAGCCGGTGCTTATTCTTACGGTACCGTCAGAACAATCGGGTA 325 Query 56 CACGTGGAAGG-TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114 || | |||| || || | ||||| ||||||| ||| || ||||| || Sbjct 326 TTAACCGACTGCTTTTCTTTCCCAACAAAAGGGCTTTACAACCCGAAGG-CCTTCTTCAC 384 Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 ||||| | ||||||| |||| || || |||||| |||||||||| |||||||||||| Sbjct 385 CCACGCGGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 444 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 |||||||||| |||||||||||||||||||| ||||| || | |||||||||| Sbjct 445 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAGA 498 >seq39498 Length=1033 Score = 154 bits (170), Expect = 3e-35 Identities = 137/171 (80%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGC----TCCCAC 56 ||||||||||||||||||||||| ||||||||||| |||| ||||| | | Sbjct 867 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCATTGAGTACCGTCAAGCAAGTTAGAAA 926 Query 57 ACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTC 116 || || | ||| ||||| |||||||||||||||||||| || ||||||||||| | Sbjct 927 ACCTGCA----TTTCTTCCCCAATAAAAGAAGTTTACAATCCAGAGGACCTTCATCCTCC 982 Query 117 ACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTG 167 |||| | ||||||||||||||| ||||||||||||||||||||| |||| Sbjct 983 ACGCGGCATGGCTGGTTCAGACTTGCGTCCATTGACCAATATTCCTTACTG 1033 >seq40246 Length=368801 Score = 120 bits (132), Expect = 6e-25 Identities = 161/223 (72%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACC-TTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||| ||||||| | | | ||| ||| || |||||| | | ||||| || | || Sbjct 311015 AAAGAGCTTTACAAGCGGCATTACCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTT 311074 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| |||| ||||| |||||||||| ||||| ||||| || ||||||||||| Sbjct 311075 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 311134 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||| ||| | ||| |||| | |||| ||| ||| || Sbjct 311135 TCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 311194 Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303 ||| || |||||||||| ||||| | |||| ||| || Sbjct 311195 ACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCG 311237 >seq22 Length=40393389 Score = 107 bits (118), Expect = 4e-21 Identities = 103/131 (79%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | ||| |||| || Sbjct 18492631 AAAAGAAGTTAACGACCCGTGGG-CCTTCGACCTCCACGCGGCATTGCTCCGTCAGGCTT 18492689 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 18492690 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 18492749 Query 201 TTCCAATGTGG 211 | ||| ||||| Sbjct 18492750 TCCCAGTGTGG 18492760 >seq4536 Length=917 Score = 100 bits (110), Expect = 6e-19 Identities = 195/284 (69%), Gaps = 7/284 (2%) Strand=Plus/Minus Query 2 GCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCAC-ACGT 60 |||||||||||||||||||||| ||||| || | ||||| ||| | | | || Sbjct 373 GCTGCTGGCACGGAGTTAGCCGGTGCTTCTTTACTTGGTACCCTCAAATTTGAATGATGT 314 Query 61 --GGA---AGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTT 115 | | | | || ||||| |||||| ||||| | ||| || |||||||| || Sbjct 313 TAGCATCCATCTCTTGTTCCCAAGCGAAAGAACTTTACGACCCG-AGGGCCTTCATCGTT 255 Query 116 CACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCC 175 ||||| | | || |||| || ||| |||||| | |||| ||||| |||||| Sbjct 254 CACGCAGCGTCGCATCGTCAGGCTTTCGCCCATTGCGGATGATTCTCGACTGCAGCCTCC 195 Query 176 CGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTA 235 ||||||||| ||| | |||||||||| ||| ||| || | | |||||| | |||| Sbjct 194 CGTAGGAGTCTGGGCAGTGTCTCAGTCCCAGTGTTGGCGGTCAATCTCTCAACCCGCCTA 135 Query 236 TCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | || ||| || |||| ||| ||||| | || || | || || Sbjct 134 GACGTCTTAGCCTTGGTGAGCCATTACCTCACCAACAAGCTGAT 91 >seq127 Length=60962716 Score = 80.6 bits (88), Expect = 6e-13 Identities = 96/129 (74%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAACC-TTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||| | |||||||| | | | ||| ||| || ||||| | | | ||| || | || Sbjct 15335516 AAAAAGGTTTACAAGCGGCATTACCCTTCCTCACTCACGAGATATTGTTGGATCGGGCTT 15335457 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| |||| ||||| |||||||||| ||||| ||||| || |||||||||| Sbjct 15335456 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGTCGTGTCTCAG 15335397 Query 201 TTCCAATGT 209 | ||| ||| Sbjct 15335396 TCCCAGTGT 15335388 >seq145 Length=44152522 Score = 78.8 bits (86), Expect = 2e-12 Identities = 83/108 (77%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||| | ||||| ||| |||||| | | ||| |||| || Sbjct 19678077 AAAAGAAGTTCATGACCCGTGGG-CCTTCGGCCTCCACGCTGCATTGCTCCGTCAGGCTT 19678135 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGG 188 ||| |||||| || ||||| |||||||||||||||||||||| ||| Sbjct 19678136 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 19678183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068369850752