Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1433 226 5e-57 seq31184 223 6e-56 seq34656 120 5e-25 seq36990 111 3e-22 seq34927 111 3e-22 seq24237 107 3e-21 seq3069 107 3e-21 seq1486 102 1e-19 seq344 102 1e-19 seq97 100 5e-19 seq43 96.9 6e-18 seq145 93.3 7e-17 seq66 91.5 2e-16 seq17505 86.0 1e-14 seq2 86.0 1e-14 >seq1433 Length=3754 Score = 226 bits (250), Expect = 5e-57 Identities = 223/279 (80%), Gaps = 7/279 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||| | Sbjct 3184 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCATT 3127 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| Sbjct 3126 GCCGCGAAGCTACCATCTGCCGGATAATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCA 3067 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||| | | || | |||| |||| | ||| ||| |||||||||||||||| | Sbjct 3066 GAAAGCGACGACGC-CTCCCGCACGT-ATAGATGGACACGAATAGGCTTCGGCTTAGCGT 3009 Query 181 CTTAGCAGGCCGGCAACG-GGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 |||||||||| | |||| || ||| ||||||| | | | | | || |||||||| Sbjct 3008 CTTAGCAGGCAAGGAACGCCACGGCCC-AGGAAGCGGGCTGTGGT-ACCTTGCGGATTGT 2951 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| || | || ||| ||||| ||||||||||| Sbjct 2950 AATTTCAGCACGAGCGGGGTCGAATCCCTTGCAGACGAC 2912 >seq31184 Length=522 Score = 223 bits (246), Expect = 6e-56 Identities = 215/267 (81%), Gaps = 7/267 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 262 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 205 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| Sbjct 204 GCCGCGAAGCTACCATCTGCCGGATAATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCA 145 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||| | | || | |||| |||| | ||| ||| |||||||||||||||| | Sbjct 144 GAAAGCGACGACGC-CTCCCGCACGT-ATAGATGGACACGAATAGGCTTCGGCTTAGCGT 87 Query 181 CTTAGCAGGCCGGCAACG-GGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 |||||||||| || | || ||| ||| ||||||| | ||| | | || ||| |||| Sbjct 86 CTTAGCAGGCAGGGACCGCCGCGGCCC-AGGAAGCGGGTTGCGGT-ACCTTGCGAATTGT 29 Query 240 AATTTCACCATGCGCAGGGATAAATCC 266 ||||||| || | || ||| ||||| Sbjct 28 AATTTCAGCACGAGCGGGGTCGAATCC 2 >seq34656 Length=1692 Score = 120 bits (132), Expect = 5e-25 Identities = 102/123 (83%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | ||||||||| ||||| || ||| || |||| Sbjct 1253 GTACGAGAGGAACCGTTGA-TTC-GCATAATTGGTAATTGCGCTTGGTTGAAAAGTCAGT 1196 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1195 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCTGTGCCA 1136 Query 121 GAA 123 ||| Sbjct 1135 GAA 1133 >seq36990 Length=1260 Score = 111 bits (122), Expect = 3e-22 Identities = 100/123 (81%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 82 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 139 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| |||| Sbjct 140 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCA 199 Query 121 GAA 123 ||| Sbjct 200 GAA 202 >seq34927 Length=1620 Score = 111 bits (122), Expect = 3e-22 Identities = 100/123 (81%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| || || ||| | | ||||||| | ||| || |||| || |||| Sbjct 608 GTACGAGAGGAATCGTTGA-TTC-GCACAATTGGTAATCGCGCTTGGCTGAAAAGCCAGT 665 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| |||| Sbjct 666 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCA 725 Query 121 GAA 123 ||| Sbjct 726 GAA 728 >seq24237 Length=590 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||||| || | || ||| || || | Sbjct 549 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTATGTGCTTGGTTGATAAGCCAAT 492 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 491 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGTCCA 432 Query 121 GAA 123 ||| Sbjct 431 GAA 429 >seq3069 Length=967 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 97 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTAATCGCGCTTGGTTGAAAAGCCAGT 154 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||| | ||||||||||| |||||||||||||||||||||||| |||| Sbjct 155 GGCGCGAAGCTACTGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCA 214 Query 121 GAA 123 ||| Sbjct 215 GAA 217 >seq1486 Length=6015 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || ||||||| | ||| || ||| || |||| Sbjct 5490 GTACGAGAGGAACCGTTGA-TTCGCAA-AATTGGTAATCGCGCTTGGTTGAAAAGCCAGT 5433 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| ||||||||||||||||||| |||| |||| Sbjct 5432 GGCGCGAAGCTACCGTGCGGTGGATTATGACTGAACGCCTCTAAGTCAGGATCCGGGCCA 5373 Query 121 GAA 123 ||| Sbjct 5372 GAA 5370 >seq344 Length=88605 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| || || ||| | | ||||||| | ||| || ||| || |||| Sbjct 26522 GTACGAGAGGAATCGTTGA-TTC-GCACAATTGGTAATCGCGCTTGGTTGAAAAGCCAGT 26579 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| |||| Sbjct 26580 GGCGCGAAGCTACCTTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCA 26639 Query 121 GAA 123 || Sbjct 26640 AAA 26642 Score = 91.5 bits (100), Expect = 2e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 29 AATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTAT 88 ||||||| | ||| || ||| || ||||| |||||||||||| | ||||||| || Sbjct 7047 AATTGGTAATCGCGTTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGATCAT 7106 Query 89 GGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 | |||||||||||||||||||||||| ||||||| Sbjct 7107 GACTGAACGCCTCTAAGTCAGAATCCGGGCCAGAA 7141 >seq97 Length=519377 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 420969 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTAATCGCGCTTGGTTGAAAAGCCAGT 421026 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | ||||||||||| |||||||||||||||| ||||||| Sbjct 421027 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTTAGAATCC 421080 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| | |||||||||| | ||||||||| | ||||||||||||||||||||||| Sbjct 419250 AGCCAGTGGCTCGAAGCTACCGTGCGCTGGATTAGGACTGAACGCCTCTAAGTCAGAATC 419309 Query 114 CATGCCAGAA 123 | ||||||| Sbjct 419310 CGGGCCAGAA 419319 >seq43 Length=26577699 Score = 96.9 bits (106), Expect = 6e-18 Identities = 97/124 (78%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 || ||||||||||| || || | | ||||||| | ||| || ||| || ||||| Sbjct 10576902 TATGAGAGGAACCGTTGATTT--GCACAATTGGTAATCGCGCTTGGTTGAAAAGCCAGTG 10576845 Query 62 CCGCGAAGCTACCATCTGCTGGATTAT--GGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 |||||||||||| | |||||||||| | |||||||||||||||||||||||| ||| Sbjct 10576844 GCGCGAAGCTACCGTGCGCTGGATTATATGACTGAACGCCTCTAAGTCAGAATCCGGGCC 10576785 Query 120 AGAA 123 |||| Sbjct 10576784 AGAA 10576781 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 58 AGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATG 117 |||| ||||| ||||| | |||||||||||| |||||||||||||||||||||| | | Sbjct 4860597 AGTGGCGCGAGGCTACTGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATTCGGG 4860656 Query 118 CCAGAA 123 |||||| Sbjct 4860657 CCAGAA 4860662 >seq145 Length=44152522 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||| |||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 6913925 GTACGAGAGGGACCGTTGA-TTC-GCACAATTGGTAATCGCGCTTGGTTGAAAAGCCAGT 6913868 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||||| | ||||||||| ||||| |||||||||||||||||| |||| Sbjct 6913867 GGCACGAAGCTACCATGCGTTGGATTATGACTGAATGCCTCTAAGTCAGAATCCGGGCCA 6913808 Query 121 GAA 123 || Sbjct 6913807 CAA 6913805 Score = 89.7 bits (98), Expect = 8e-16 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | |||| || | ||| || ||| | |||| Sbjct 6741049 GTACGAGAGGAACCGTTGA-TTC-GCACAATTAGTAATCGCGCTTGGTTGAAAATCCAGT 6741106 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||| ||| | ||||||||||| ||||||| ||||||||||||||| |||| Sbjct 6741107 GGCGCGAAGCCACCGTGCGCTGGATTATGACTGAACGATTCTAAGTCAGAATCCGGGCCA 6741166 Query 121 GAA 123 ||| Sbjct 6741167 GAA 6741169 >seq66 Length=1325581 Score = 91.5 bits (100), Expect = 2e-16 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 |||||||||||||| || ||| | | ||||||| ||||| || ||| || ||||| Sbjct 1067833 TACGAGAGGAACCGTTGA-TTC-GCACAATTGGTAGTTGCGCTTGGTTGAAAAGTCAGTG 1067890 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||||||| | |||||||| ||||| || ||||| ||||||||| ||||| Sbjct 1067891 GTGCGAAGCTACCATGCGATGGATTATATCTGAATGCATCTAAATCAGAATCCGGGCCAG 1067950 Query 122 AA 123 || Sbjct 1067951 AA 1067952 >seq17505 Length=671 Score = 86.0 bits (94), Expect = 1e-14 Identities = 102/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || |||||||| | ||| | |||| |||| | Sbjct 439 GTACGAGAGGAACCGCCGG-TTCGGA-TAATTGGTAAT-GCGCTCGCCTGAAAAGGCGAT 383 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| ||||||||||| | || | | | ||||||||||||||||| ||| |||||| | Sbjct 382 GGCGCAAAGCTACCATCCGTAGGCTAACGACTGAACGCCTCTAAGTCGGAAGCCATGCTA 323 Query 121 -GAACGGGGTGAT 132 || |||||| || Sbjct 322 GGAGCGGGGTCAT 310 >seq2 Length=1523057 Score = 86.0 bits (94), Expect = 1e-14 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||| ||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 1247089 GTACGGGAGGAACCGTTGA-TTC-GCACAATTGGTAATCGCGCTTGGTTGAAAAGCCAGT 1247146 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||| |||||||||||| ||||||||| | |||| Sbjct 1247147 GGCGCGAAGCTACCGTGCAATGGATTATGACTGAACGCCTCT-AGTCAGAATTCGGGCCA 1247205 Query 121 GAA 123 ||| Sbjct 1247206 GAA 1247208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818880607744