Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq30224 134 2e-26 seq17005 87.8 3e-12 seq31886 84.2 3e-11 >seq30224 Length=530 Score = 134 bits (148), Expect = 2e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAA 196183 ||||| |||||||| || || ||| ||||| |||| |||| | || || Sbjct 192 GACCGCACCGGCACCGGAACGCTGTCGGTGTTCGGCCATCAGACGCGCCACAATTTGGCC 251 Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243 | |||||||||||| |||| || ||||| || || || |||||||| |||||| Sbjct 252 GCAGGATTCCCGCTGCTCACGACCAAGAAGCTATCCCTCAAATCGATCATTCACGAACTG 311 Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303 || |||||||| | || || |||||||||||||| || || ||| |||| ||||| ||| Sbjct 312 CTCTGGTTCCTGAGGGGCGATACCAACATCAAGTATCTCAAGGACCACGGCGTCTCGATC 371 Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 ||| ||||||||||| | || || |||| || ||||| || ||| |||||||| Sbjct 372 TGGGACGAGTGGGCGGATGAGAATGGCGACCTCGGTCCGGTCTATGGTTCTCAGTGGCG 430 >seq17005 Length=676 Score = 87.8 bits (96), Expect = 3e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 323 GTAGTTCAGTTGGTTAGAATACATGCCTGTCACGCATGGGGTCGCGGGTTCGAGTCCCGT 382 Query 3857 C 3857 | Sbjct 383 C 383 >seq31886 Length=516 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||| |||||||||||||||| |||||| Sbjct 137 GTAGTTCAGTTGGTTAGAATACCCGCCTGTCACGCGGGTGGTCGCGGGTTCGAGTCCCGT 196 Query 3857 C 3857 | Sbjct 197 C 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771154256307120