Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq28990 100 4e-16 seq12014 93.3 6e-14 seq13320 91.5 2e-13 seq3152 87.8 2e-12 seq30822 86.0 9e-12 seq26447 86.0 9e-12 seq25002 86.0 9e-12 >seq28990 Length=541 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 |||| |||||||||| ||| |||||||||||| ||||| |||||| ||||||||||||| Sbjct 307 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 366 Query 142852 TCCGTTATTCTCCAC 142866 ||||||||||||||| Sbjct 367 TCCGTTATTCTCCAC 381 >seq12014 Length=760 Score = 93.3 bits (102), Expect = 6e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 |||| |||||||||| ||| |||||| ||||| ||||| ||||| ||||||||||||| Sbjct 207 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 148 Query 142852 TCCGTTATTCTCCACCAA 142869 |||||||| ||||||||| Sbjct 147 TCCGTTATCCTCCACCAA 130 >seq13320 Length=738 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 |||| |||||||||| ||| |||||| ||||| ||||| ||||| ||||||||||||| Sbjct 168 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAC 227 Query 142852 TCCGTTATTCTCCAC 142866 ||||||||||||||| Sbjct 228 TCCGTTATTCTCCAC 242 >seq3152 Length=962 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142791 TCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 |||||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 274 TCGGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGA 333 Query 142851 GTCCGTTATTCTCCACCA 142868 |||| || |||||||| Sbjct 334 TCCCGTCATCCTCCACCA 351 >seq30822 Length=525 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142792 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||| |||||||| ||||||||||||||||||||||||||||| |||| ||||||| Sbjct 136 CGGGGCCTTAGCTCAATTGGTAGAGCGCCTGCTTTGCAAGCAGGAGGTCAGGGGTTCGAT 195 Query 142852 TCCGTTATTCTCCAC 142866 ||| || |||||| Sbjct 196 TCCCCTAGGCTCCAC 210 >seq26447 Length=566 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 134 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 193 Query 142853 CCGTTATTCTCCACCAA 142869 |||| || ||||||||| Sbjct 194 CCGTCATCCTCCACCAA 210 >seq25002 Length=583 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 136 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 195 Query 142853 CCGTTATTCTCCACCAA 142869 |||| || ||||||||| Sbjct 196 CCGTCATCCTCCACCAA 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691111344162960