Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq34752 129 3e-28 seq403 125 4e-27 seq136417 102 5e-20 seq4382 98.7 5e-19 seq202366 78.8 5e-13 >seq34752 Length=7499 Score = 129 bits (142), Expect = 3e-28 Identities = 101/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTC-AAAATGATAACATCGCC 59 ||||||||||||||||||||||| |||||||| | |||| |||||| | || | Sbjct 6935 GAACCCAAAGACTTTGATTTCTCATAAGGTGCGAATGAAGTCGAAAATGCAACGTTCACT 6876 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 6875 C-ATCCCTAGTCGGCATAGTTTATGGTTGAGACTACGACGGTATCTGATCGTCTTCGA 6819 >seq403 Length=90363 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| |||||| || Sbjct 56721 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTGCAAGCAACATCCGCC 56662 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 56661 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 56605 >seq136417 Length=110 Score = 102 bits (112), Expect = 5e-20 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 31 GCCGAGCGAGTCAAAATGAT-AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAA 89 ||||||| |||||||| ||| ||||| ||||||||||||||||||||||||||| |||| Sbjct 1 GCCGAGCCAGTCAAAA-GATGAACATGGCCCGATCCCTAGTCGGCATAGTTTACTGTTAG 59 Query 90 GACTACGACGGTATCTGATCGTCTTCGA 117 |||||| ||||||||| ||| | || || Sbjct 60 GACTACAACGGTATCTAATCATTTTTGA 87 >seq4382 Length=18589 Score = 98.7 bits (108), Expect = 5e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 7214 GAACCCAATGACTTTGATTTCTTATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCTGCC 7273 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | ||| |||| |||| |||| |||||| || ||||||| |||||||| || Sbjct 7274 GATCCTTGGTCAGCATCATTTATGGTTGAGACTAGGATGGTATCTAATCGTCTTTGA 7330 >seq202366 Length=120 Score = 78.8 bits (86), Expect = 5e-13 Identities = 65/78 (83%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 16 GATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCA 75 |||||||| | ||||||||| ||||||| | | | | ||| ||||||||||||||||| Sbjct 77 GATTTCTCTTCAGGTGCCGAACGAGTCATTAAAA-ATCCTCGTCCGATCCCTAGTCGGCA 19 Query 76 TAGTTTACGGTTAAGACT 93 | |||||| ||||||||| Sbjct 18 TCGTTTACTGTTAAGACT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276959501850