Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq59094 125 7e-27 seq525343 86.0 6e-15 seq479338 78.8 9e-13 >seq59094 Length=1136 Score = 125 bits (138), Expect = 7e-27 Identities = 137/181 (76%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||| ||||||||||| |||| ||||||| |||||||| |||||||||||| ||||| | Sbjct 212 ACGGGGGATGCCTAGGGTCTCAGAGGCGATGAAGGACGCGATAAGCTGCGATAAGCTCGG 153 Query 66 GGGATTGGCACATACGAATT-GATCCGTAGATATCCGAATGGGGCAACCCGATATATTGG 124 |||| ||||||||| || |||| |||| ||||||||||||||||| || ||| Sbjct 152 GGGAGAGGCACATACTCGTTATATCCCGAGATTTCCGAATGGGGCAACCCCTTAGGTTGA 93 Query 125 AGATATATCATAACGC-----TAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGT 179 ||| || | || | | || | || ||||| |||||||||||||||| ||| Sbjct 92 AGACCTAAGACCACTCCTTTATTGGACTGGAGCAAACGTTGGGAACTGAAACATCTCAGT 33 Query 180 A 180 | Sbjct 32 A 32 >seq525343 Length=371 Score = 86.0 bits (94), Expect = 6e-15 Identities = 135/186 (73%), Gaps = 7/186 (4%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| | |||||| ||||||||| || ||||| |||| Sbjct 259 GCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGC 200 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 | |||||| | ||| | | |||||||| |||| ||||||||||| |||||| | Sbjct 199 TGCGGGGAGCTAGCAAACGAGCTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCTT 140 Query 121 T-TGGAGAT-ATA-TCATAACGC-TAGGCGT--TAGGCGAACGTGGGGAACTGAAACATC 174 | ||| || || | || | |||| || | ||||||| || ||||||||||||| Sbjct 139 TATGGTCATCGTACACTGAATACATAGGTGTACGAAGCGAACGCGGCGAACTGAAACATC 80 Query 175 TAAGTA 180 |||||| Sbjct 79 TAAGTA 74 >seq479338 Length=234 Score = 78.8 bits (86), Expect = 9e-13 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 ||||||||| ||||||| || ||||||||||||| ||| || | |||||| ||| || Sbjct 175 ACGGTGGATACCTAGGCATTCAGAGGCGAAGAAGGGCGTCGTAGCCGGCGAAATGCTCCG 116 Query 66 GGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||| ||| | || | | |||||| |||| |||||||||| ||||| Sbjct 115 GGGAGCTGGGA-TTATGTAAAGATCCGGAGATTCCCGAATGGGGTAACCC 67 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474250704615