Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq8560 104 3e-20 seq2024 104 3e-20 seq17234 86.0 9e-15 seq7079 84.2 3e-14 seq481895 82.4 1e-13 seq21893 78.8 1e-12 seq127002 77.0 4e-12 seq15299 77.0 4e-12 seq360727 75.2 2e-11 seq497199 73.4 5e-11 seq390532 73.4 5e-11 >seq8560 Length=29517 Score = 104 bits (114), Expect = 3e-20 Identities = 137/185 (74%), Gaps = 9/185 (5%) Strand=Plus/Minus Query 65 CTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACAC 124 |||||||||| |||||||||||| ||| | ||||| || |||| |||| | | Sbjct 11655 CTGTGTTTTTGGTAAACAGTCGCACCCCCCGATTCTGTGACACCA--ACCA---TTATAT 11601 Query 125 GTCGTTCACCAGCAGTGGCACCCCTTCTCC-CGAAGTTACGGGGCCATTTTGCCGAATTC 183 | | | |||| ||| ||||| ||| | |||||||||| || |||||||| ||| Sbjct 11600 ATAATATAACAGC--TGGTCACCCTTATCCTCTAAGTTACGGGTGCAGTTTGCCGAGTTC 11543 Query 184 CTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243 ||| | |||| | | | ||||||||||||||||||||| |||||||||||||||| Sbjct 11542 CTTCA-CACACATTAGCTCTTCGCCTTAGTATTCTCTACCTGCGCACCTGTGTCGGTTTA 11484 Query 244 CGGTA 248 |||| Sbjct 11483 GGGTA 11479 >seq2024 Length=4771 Score = 104 bits (114), Expect = 3e-20 Identities = 165/235 (70%), Gaps = 15/235 (6%) Strand=Plus/Minus Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73 || ||||||| ||| || ||||| | ||||||| |||| ||| | ||||||||| Sbjct 2402 CATCGGGCAGATTTCATACCTTATACTTAGACTTAC-GTCTCTGCAAAGTACTGTGTTTT 2344 Query 74 TAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCAC 133 |||||||||| | | | ||| |||| | || | | | ||||| Sbjct 2343 AAGTAAACAGTTGTACAACACGATTTTCTGTGGCC-------GTTTGA------GTTCAT 2297 Query 134 CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACA 193 || | || || ||||||||| ||||||||| | ||||||||||| |||||| | | | Sbjct 2296 CAATAC-GGTACTCCTTCTCCCTAAGTTACGGAGGCATTTTGCCGAGTTCCTTCGCGATA 2238 Query 194 GTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||| | | |||||||||||||| ||||| | ||| ||||||||||| |||| Sbjct 2237 GTTCTCTCATACGCCTTAGTATTCCCTACCAGCAAACCAGTGTCGGTTTAGGGTA 2183 >seq17234 Length=3955 Score = 86.0 bits (94), Expect = 9e-15 Identities = 83/104 (80%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 146 CCCTTCTCC-CGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAA 204 ||||| ||| | |||||||||| || |||||||| |||||| || ||| | | | Sbjct 74 CCCTTATCCTCTAAGTTACGGGTGCAGTTTGCCGAGTTCCTTCAC-ACACATTAGCTCTT 132 Query 205 CGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | ||||||||||||||||||| |||||||||||||||| |||| Sbjct 133 CACCTTAGTATTCTCTACCTGCGCACCTGTGTCGGTTTAGGGTA 176 >seq7079 Length=28176 Score = 84.2 bits (92), Expect = 3e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 140 TGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC 199 |||||| |||| |||| ||||||||| | ||||||||||| |||||||| | ||| || Sbjct 23495 TGGCACACCTTATCCCTAAGTTACGGTGTCATTTTGCCGAGTTCCTTAATGATTGTTAAC 23436 Query 200 CCGAACGCCTTAGTATTCTCTACCTG 225 | |||||||| |||| |||||| || Sbjct 23435 TCAAACGCCTTTGTATACTCTACTTG 23410 >seq481895 Length=238 Score = 82.4 bits (90), Expect = 1e-13 Identities = 82/105 (78%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| || |||| || || ||| Sbjct 79 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACGTCCGCTTA-CGCGTTAGCAA 137 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCG 105 | | ||||||||| ||||||||||||| ||| ||| ||||| Sbjct 138 AGCCATGTGTTTTTGTTAAACAGTCGCTTGGGTCTTTTCACTGCG 182 >seq21893 Length=3839 Score = 78.8 bits (86), Expect = 1e-12 Identities = 158/227 (70%), Gaps = 13/227 (6%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAG---GCGTCAGTCCGTATACATCGACTTACCGTCTT-CG 57 ||| || |||||| |||||| ||| || || ||||||| || |||| |||| || Sbjct 1803 TTAACCAGCCATCATTGGGCAGATAGCG-CACTC--TATACATTGATTTACA-TCTTACG 1858 Query 58 CACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGC 117 || | ||||||||| | |||||||||| | | ||| | || || | || Sbjct 1859 CAAAGTGCTGTGTTTTAATTAAACAGTCGTGCAACACCATTTTATGTCTCCTCTTCC--- 1915 Query 118 TCAACACGTCGT--TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 | ||| | | ||| || | |||||| ||||||||| |||||||| | || |||| Sbjct 1916 TAAACTGATATTAATCAGTAGGAATGGCACACCTTCTCCCTCAGTTACGGTGTCAATTTG 1975 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTAC 222 |||| |||||||| | ||| | | |||||||| ||||||||||| Sbjct 1976 CCGAGTTCCTTAATGATTGTTAGCTCAAACGCCTTCGTATTCTCTAC 2022 >seq127002 Length=108 Score = 77.0 bits (84), Expect = 4e-12 Identities = 68/84 (81%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 140 TGGCACCCCTTCTCCCGAAGTTACGGG-GCCATTTTGCCGAATTCCTTAACCACAGTTCA 198 |||| | |||| |||||||||||||| | | |||||||| |||||||| | ||||| Sbjct 93 TGGCTCTCCTTATCCCGAAGTTACGGTAGTTAGTTTGCCGAGTTCCTTAATGATTGTTCA 34 Query 199 CCCGAACGCCTTAGTATTCTCTAC 222 | | |||||||| ||||||||||| Sbjct 33 CTCAAACGCCTTCGTATTCTCTAC 10 >seq15299 Length=44966 Score = 77.0 bits (84), Expect = 4e-12 Identities = 68/84 (81%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 140 TGGCACCCCTTCTCCCGAAGTTACGGG-GCCATTTTGCCGAATTCCTTAACCACAGTTCA 198 |||| | |||| |||||||||||||| | | |||||||| |||||||| | ||||| Sbjct 928 TGGCTCTCCTTATCCCGAAGTTACGGTAGTTAGTTTGCCGAGTTCCTTAATGATTGTTCA 869 Query 199 CCCGAACGCCTTAGTATTCTCTAC 222 | | |||||||| ||||||||||| Sbjct 868 CTCAAACGCCTTCGTATTCTCTAC 845 >seq360727 Length=156 Score = 75.2 bits (82), Expect = 2e-11 Identities = 66/81 (81%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| ||| || ||| | || Sbjct 12 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGTTTGCAGAGTGCT 70 Query 67 GTGTTTTTAGTAAACAGTCGC 87 ||||||||| ||||||||||| Sbjct 71 GTGTTTTTATTAAACAGTCGC 91 >seq497199 Length=264 Score = 73.4 bits (80), Expect = 5e-11 Identities = 72/92 (78%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 157 AAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATT 216 |||||||||| || |||||||| |||||| || | | | | | | |||||||||| Sbjct 2 AAGTTACGGGTGCAGTTTGCCGAGTTCCTTCAC-ATATATTAGCTCTTCACCTTAGTATT 60 Query 217 CTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||||||||| |||||| ||||||||| |||| Sbjct 61 CTCTACCTGCGCACCTGAGTCGGTTTAGGGTA 92 >seq390532 Length=168 Score = 73.4 bits (80), Expect = 5e-11 Identities = 76/97 (78%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 146 CCCTTCTCC-CGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAA 204 ||||| ||| | |||||||||| || |||||||| |||||| || | | | | | Sbjct 73 CCCTTATCCTCTAAGTTACGGGTGCAATTTGCCGAGTTCCTTCAC-ATACATTAGCTCTC 131 Query 205 CGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 | ||||||||||||||||||| |||||||||||||| Sbjct 132 CACCTTAGTATTCTCTACCTGCGCACCTGTGTCGGTT 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690687267795