Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq69449 509 3e-142 seq54683 347 2e-93 seq7919 320 3e-85 seq13885 248 1e-63 seq5939 165 1e-38 seq4686 104 4e-20 seq37100 95.1 2e-17 seq538277 73.4 7e-11 >seq69449 Length=2409 Score = 509 bits (564), Expect = 3e-142 Identities = 290/295 (98%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 1172 TACTAAGCGGTATTACCATTGGGACGACATTCATCAGTAGGGTAAAACTAACCTGTCTCA 1113 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1112 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 1053 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1052 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 993 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 992 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 933 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 932 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 878 >seq54683 Length=1688 Score = 347 bits (384), Expect = 2e-93 Identities = 255/296 (86%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG--TCATCAGTAGGGTAAAACTAACCTGTCT 58 |||||| | ||||| ||| |||||| |||||||||||||||||||||||||||| Sbjct 549 TACTAAATTGGATTACTGTTGCGGCGACCACTTCATCAGTAGGGTAAAACTAACCTGTCT 490 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || |||||||||||||||||||||||||||| || |||| |||||||||| || ||| | Sbjct 489 CACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGTGGATGAACAATCCGACACTTGGC 430 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 | |||| | ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 429 CTCTGCTGCGAGGCAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTCGCT 370 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 369 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTACCTTTTCTGACACCTCTAGC 310 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | || |||| | ||||||||||||||||||||| |||||| ||||||||||| Sbjct 309 TTAAAGTTTCTAAAGACTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTCA 254 >seq7919 Length=50109 Score = 320 bits (354), Expect = 3e-85 Identities = 244/286 (85%), Gaps = 3/286 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || |||| ||||| ||||||||||||||| ||| Sbjct 12794 TACTAGGTTGAATTACTATTGTGAC-ACTATCATTAGTAGAGTAAAACTAACCTGTTTCA 12736 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||| |||||||||||||||| |||||||||| ||||||||||||||||| || | Sbjct 12735 CGACAGTCTAAACCCAGCTCAGGTTCCCTATTGGTGGGTGAACAATCCAAAAATTGGTAA 12676 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 12675 ATTCTGCTTCACAATGATTGGAAGAGCCGACATCAAAGGATCAAAAAGCAACGTCGCTAT 12616 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 || |||||||||||||||||||| ||||| ||||||||||||| || |||||||||| | Sbjct 12615 GATCGCTTGGCTGCCACAAGCCAATTATCTCTGTGGTAACTTT--TGACACCTCTAGCTT 12558 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTT 286 |||||| | | | |||||||||| ||||||||| ||||||||||| Sbjct 12557 CAAATTCCAAAAGTCTAAAGGATCAATAGGCCACGCTTTCATGGTT 12512 >seq13885 Length=3039 Score = 248 bits (274), Expect = 1e-63 Identities = 154/165 (93%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2875 TACTAAGCTGAATTACCATTGCGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 2934 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | Sbjct 2935 CGACGGTCTAAACCCAGCTCACGTTCCCTATTTACTGGTGAACAATCAGACGCTTACCCA 2994 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2995 ATTCTGCTTGGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 3039 >seq5939 Length=9938 Score = 165 bits (182), Expect = 1e-38 Identities = 102/109 (94%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 4707 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAA 4648 Query 245 TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||| || ||||| |||||||||||||| |||||||||||||||||| Sbjct 4647 TTCCGAAGGTCTAAAAGATCGATAGGCCACGCTTTCATGGTTTGTATTC 4599 >seq4686 Length=7524 Score = 104 bits (114), Expect = 4e-20 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC 276 ||||||||||| |||||||||| ||||||| ||| || |||||||||||||||||||| | Sbjct 3494 TAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGC 3435 Query 277 TTTCATGGTTTGTATTC 293 ||||| |||| |||||| Sbjct 3434 TTTCACGGTTCGTATTC 3418 >seq37100 Length=10473 Score = 95.1 bits (104), Expect = 2e-17 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| Sbjct 2091 GTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCT 2032 Query 126 GCTTC 130 ||||| Sbjct 2031 GCTTC 2027 >seq538277 Length=535 Score = 73.4 bits (80), Expect = 7e-11 Identities = 81/107 (76%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||| ||| ||| |||||||||||||||||| ||| ||| | || ||||| | ||| Sbjct 131 CTGTTTCACAACGTTCTAAACCCAGCTCACGTACCCCTTTAATTGGCGAACAGCCAAACC 72 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||| |||| ||| ||| ||| ||| ||| ||||||||||||| Sbjct 71 CTTGGAACCGCTTTCAGCTCCGG---GATGGGACGAGCCGACATCGA 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 849684438240