Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq447139 150 4e-34 seq517377 147 4e-33 seq28311 120 6e-25 seq22567 111 3e-22 seq412463 107 4e-21 seq4771 102 2e-19 seq62886 98.7 2e-18 seq8560 93.3 8e-17 seq267808 82.4 1e-13 seq270 80.6 5e-13 seq7518 75.2 2e-11 >seq447139 Length=201 Score = 150 bits (166), Expect = 4e-34 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 149 CCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGC 208 ||||| |||| |||||||||| | | ||| ||| || | || ||| | | ||| Sbjct 1 CCTCCTAAAGTGTAACGGAGGAGTTCGAAGGTACGCTAGGTACGGTCGGACATCGTGCTA 60 Query 209 ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAG 268 | ||||||| |||| ||| ||| || ||||||| ||| |||||| |||||| ||||||| Sbjct 61 ATAGTGCAATGGCATAAGCGTGCTTAACTGCGAGACCGACAAGTCGAGCAGGTACGAAAG 120 Query 269 TCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTA 328 | || | || |||||||| ||| ||| |||||| |||| |||||| ||||||||||| || Sbjct 121 TAGGACATAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTA 180 Query 329 CCCTGGGGATA 339 | ||||||||| Sbjct 181 CTCTGGGGATA 191 >seq517377 Length=326 Score = 147 bits (162), Expect = 4e-33 Identities = 137/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 || || ||| ||| | | |||||| ||||||| | |||||||||||||||| |||||| Sbjct 174 GGAACCGTGCCAGGCAGACAGTTTCTCTGGGGCAGAGGCCTCCCAAAGAGTAATGGAGGC 115 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | ||||| | ||||||| |||| || || || | | |||| ||||||| ||||| | Sbjct 114 GTGCAAAGGTTCCCTCAGGCTGGACGGGAATCAGTTGTAGAGTGTAAAGGCAGAAGGGAG 55 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCC 284 |||||||| | ||| |||||| |||||||||||||||||| |||| |||||| Sbjct 54 CTTGACTGCAAGACCAACAAGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCC 1 >seq28311 Length=11406 Score = 120 bits (132), Expect = 6e-25 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||||||| | |||||| |||| | |||||||||| ||||||| ||| Sbjct 276 GGGACAGTGTCAGGTAGACAGTTTCTATGGGATGTAGGCCTCCCAAAAGGTAACGGGGGC 217 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACA-GTGCAAAGGCAAAAGGGT 229 | |||| | |||| |||||| | |||| || ||||| ||||| ||||| Sbjct 216 GTGCAAAAGTTTTCTCAAGCCAGATGGAGATTG-GCGCTCAAGTGCATAGGCAGAAGGGA 158 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | | | | ||| |||||||||||||||||| |||| ||||||| | Sbjct 157 GCTTGACTGCAAGATTCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGATGA 98 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGA 337 || | ||||| |||||| ||| | ||||||||| ||| || |||| Sbjct 97 TGTCGGGTGGAAGGGCCGTTACTCAATGGATAAAAGTTACTCTAGGGA 50 >seq22567 Length=3787 Score = 111 bits (122), Expect = 3e-22 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||||| || | |||||| |||| || |||||||||| ||||||| ||| Sbjct 3378 GGGACAGTGTTAGGTAGACAGTTTTTATGGGACGTAGGCCTCCCAAAAGGTAACGGGGGC 3319 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | |||| | |||| ||| || | ||| | |||||||||||| ||||| Sbjct 3318 GTGCAAAAGTTTTCTCAAGCCAGATAGAGATTG-GCGTTCGAGTGCAAAGGCAGAAGGGA 3260 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | | | | ||| |||||||| ||||||||| |||| ||||||| || Sbjct 3259 GCTTGACTGCAAGATTCACCCGTCGAGCAGGGAAGAAAGTCGGCCTTAGTGATCCGACGA 3200 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGA 337 || | ||||| |||||| ||| | | ||||||| ||| || |||| Sbjct 3199 TGTCAAGTGGAAGGGCCGTTACTCAATGAATAAAAGTTACTCTAGGGA 3152 >seq412463 Length=179 Score = 107 bits (118), Expect = 4e-21 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||||||| |||| ||| | ||||||||| || |||||| ||||| |||||||||| Sbjct 40 AGTGCAATGGCATAAGCCCGCCTGACTGCGAGACTGACAAGTCGAGCAGAGACGAAAGTC 99 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || | || |||||||| ||| | ||||| |||| |||||| ||||||||||| ||| Sbjct 100 GGTCATAGTGATCCGGTGGTCCCTCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACG 159 Query 331 CTGGGGATA 339 | ||||||| Sbjct 160 CCGGGGATA 168 >seq4771 Length=27405 Score = 102 bits (112), Expect = 2e-19 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 251 GTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCG 310 ||| ||||||||||||||| || |||| ||||||| |||||| || ||||| |||||||| Sbjct 19515 GTCGAGCAGGGACGAAAGTTGGCCTTAGTGATCCGACGGTGCAGAGTGGAAGGGCCGTCG 19574 Query 311 CTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| ||||||||||| ||| || ||||| Sbjct 19575 CTCAACGGATAAAAGTTACTTTGTGGATA 19603 >seq62886 Length=3827 Score = 98.7 bits (108), Expect = 2e-18 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 251 GTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCG 310 ||| |||||||||||||||||| |||| ||||||| ||||| || ||||| |||||||| Sbjct 3341 GTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGTAGAGTGGAAGGGCCGTCG 3282 Query 311 CTCGACGGATAAAAGCTAC 329 ||| ||||||||||| ||| Sbjct 3281 CTCAACGGATAAAAGTTAC 3263 >seq8560 Length=29517 Score = 93.3 bits (102), Expect = 8e-17 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||| || ||||||| | || ||||| | ||| |||||| | |||| ||| |||| Sbjct 12341 AGTGTAATAGCAAAAGCAAGCTTAACTGCAAGACCGACAAGTCGAACAGGTACGTAAGTA 12400 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 ||| || |||||||| || | |||||||||| |||||| ||| ||||||||||| Sbjct 12401 GGGTATAGTGATCCGGTAGTACGTTATGGAACGGCTATCGCTCAACGAATAAAAGCTACG 12460 Query 331 CTGGGGATA 339 ||||||||| Sbjct 12461 CTGGGGATA 12469 >seq267808 Length=133 Score = 82.4 bits (90), Expect = 1e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 || ||||| | ||| |||||| | |||| ||| |||| ||| || |||||||| || Sbjct 3 TTAACTGCAAGACCGACAAGTCGAACAGGTACGTAAGTAGGGTATAGTGATCCGGTAGTA 62 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| ||| |||||| ||| ||||||||||| ||||||||| Sbjct 63 CATTATGGAATGGCTATCGCTCAACGAATAAAAGCTACGCTGGGGATA 110 >seq270 Length=46803 Score = 80.6 bits (88), Expect = 5e-13 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||||||||||||||| | | |||||| | | | | || |||||||| ||||||| Sbjct 42874 AGTGCAAAGGCAAAAAAGAGCTTGACTAGAAGATTCACCCATCGAGCAGGGATGAAAGTC 42815 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAA 324 || |||| ||||| |||||| | ||| |||| ||||||||||||||||| Sbjct 42814 GGTCTTAGTGATCTAACGGTGCCGGGGAGAATGGCCATCGCTCGACGGATAAAA 42761 >seq7518 Length=8815 Score = 75.2 bits (82), Expect = 2e-11 Identities = 102/140 (73%), Gaps = 12/140 (9%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCC-TCAAGTCTAGCAGGGACGAAAGT 269 |||||||||||||||| | | |||||| | | | || | || ||||||||||||||| Sbjct 3346 AGTGCAAAGGCAAAAGAGAGCTTGACTAGAAGATTCATCCA-TCGAGCAGGGACGAAAGT 3288 Query 270 CGGGCTTAATGATC---CG-------GCGGTGCTGAATGGAACGGCCGTCGCTCGACGGA 319 | | |||| ||||| || | |||||| | |||| |||||| |||| ||||| Sbjct 3287 CAGTCTTAGTGATCTATCGGTGCTAAGGGGTGCTAAGGGGAATGGCCGTTGCTCAACGGA 3228 Query 320 TAAAAGCTACCCTGGGGATA 339 ||||| ||| || | |||| Sbjct 3227 TAAAAATTACTCTAGAGATA 3208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 976977987040