Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq229018 89.7 6e-16 seq514979 86.0 7e-15 seq279189 86.0 7e-15 seq21324 80.6 3e-13 seq6453 77.0 4e-12 seq1861 77.0 4e-12 seq30846 73.4 4e-11 >seq229018 Length=125 Score = 89.7 bits (98), Expect = 6e-16 Identities = 90/121 (74%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | |||||||| || |||||||||| || | | ||||||| ||| Sbjct 5 CGGGGTCTTTCCGTCTAACCGCGGGTACTCCGCATCTTCACGGAGAATTCAATTTCGCTG 64 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 ||| | ||||||| ||| |||||||||||||||||||||||||| Sbjct 65 AGCATGTCCTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 124 Query 143 G 143 | Sbjct 125 G 125 >seq514979 Length=315 Score = 86.0 bits (94), Expect = 7e-15 Identities = 106/149 (71%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||||| | |||| | |||||||||| | | | ||||||| ||| Sbjct 306 GGGTCTTTCTGTCCCAGTGGAGGTAGCCCGCATCTTCACAGGCATGTCTATTTCACCGAG 247 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | ||||||| ||| || ||||||| |||| ||||||||| || Sbjct 246 CCCCTCTCCGAGACAGCGCCCAAATCGTTACGCCTTTCGTGCGGGTCAGAACTTACCTGA 187 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||| ||||||||||||||||||| ||||| Sbjct 186 CAATGAATTTCGCTACCTTAGGATCGTTA 158 >seq279189 Length=136 Score = 86.0 bits (94), Expect = 7e-15 Identities = 98/136 (72%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 136 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 77 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 76 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 17 Query 143 GACAAGGAATTTCGCT 158 |||||||||||||||| Sbjct 16 GACAAGGAATTTCGCT 1 >seq21324 Length=36789 Score = 80.6 bits (88), Expect = 3e-13 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 130 TCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 29877 TCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 29920 >seq6453 Length=77471 Score = 77.0 bits (84), Expect = 4e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || |||||| ||||| |||||||||| |||||||||||| |||||||| |||||||| Sbjct 50327 CCTTTCGTGTAGGTCAGAACTTACCCAACAAGGAATTTCACTACCTTAAGACCGTTA 50271 >seq1861 Length=58045 Score = 77.0 bits (84), Expect = 4e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || || |||| |||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct 33967 CCTTTTGTGCGGGTCGGAACTTATCCGACAAGAAATTTCGCTACCTTAGGACCATTA 33911 >seq30846 Length=10447 Score = 73.4 bits (80), Expect = 4e-11 Identities = 92/128 (72%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 47 GTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGT-TGAGACAGNNNNN 105 |||| | |||||||||| | || | ||||||||||||| | || | |||||||| Sbjct 9294 GTAAACCGCATCTTCACGGCTAATTCAATTTCACTGAGAT-ACTATATGAGACAGCAGAG 9236 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 ||| | |||| |||||| | | | ||| | | ||||||||||||||||||||| Sbjct 9235 GCATTATTACTCTATTCATGCAGGACCGCATTTAACGGCCAAGGAATTTCGCTACCTTAG 9176 Query 166 GACCGTTA 173 | | ||| Sbjct 9175 AATCCTTA 9168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544274298585