Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq512363 179 8e-43 seq151655 107 4e-21 seq28274 102 2e-19 seq538379 96.9 7e-18 seq5501 89.7 1e-15 seq7179 78.8 2e-12 seq29810 77.0 7e-12 >seq512363 Length=306 Score = 179 bits (198), Expect = 8e-43 Identities = 158/193 (82%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 2 TTTACAA-TCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||| | || ||| ||||||| | |||||||||| |||||| ||||||| |||||| Sbjct 212 TTTACGACTCAGAAAGCCTTCTTCCTG-CACGCGGCAT-GGCTGGGTCAGGCTCTCGCCC 155 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| ||||||||||| |||||||||||||||||||||| || |||| ||||||| || | Sbjct 154 ATTGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCGGGCCCGTATCTCAGTGCCCG 95 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| || || |||||||| | || |||||||||||||| |||| |||||| | Sbjct 94 TGTGGGGGACCAGCCTCTCAGCTCCCCTAGTCATCGTCGCCTTGGTAAGCCGTTACCTTA 35 Query 181 CCAACTAGCTAAT 193 ||||||||||||| Sbjct 34 CCAACTAGCTAAT 22 >seq151655 Length=112 Score = 107 bits (118), Expect = 4e-21 Identities = 90/107 (84%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| |||||||||| |||| ||||||| ||||||| | Sbjct 105 CTTTACAAGCGGCATTGCCCTTCTT-CACACACGCGATATTG-CTGGATCGGGCTTTCCC 48 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACC 105 ||| |||||||||||||||||||||||| ||||| |||||| || || Sbjct 47 CCACTGTCCAATATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCC 1 >seq28274 Length=12189 Score = 102 bits (112), Expect = 2e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 111 TCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGC 170 ||||| |||||||| ||||||||||||| |||||| ||| |||| | |||||||| ||| Sbjct 11133 TCAGTCCCAGTGTGGTTGATCATCCTCTCGGACCAGCTACTGATCATTGCCTTGGTAAGC 11192 Query 171 CATTACCTCACCAACTAGCTAATC 194 ||| ||||||||||||||||||| Sbjct 11193 TATTGCCTCACCAACTAGCTAATC 11216 >seq538379 Length=538 Score = 96.9 bits (106), Expect = 7e-18 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||| |||||||| | | ||||||||||||| |||| || ||||| || ||||| ||| Sbjct 414 CACACGGCATTGCTTTG-TCAGGCTTTCGCCTATTGCGAAAAATTCCTCA-TGCTGACTC 357 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| |||| ||| |||||||||||| |||||||| | || |||||||| ||| Sbjct 356 TCGTAAGAGTTTGGGCCGTGTCTCAGTCCCAGTGTGGATAATTATCCTCTCGGAC 302 >seq5501 Length=50376 Score = 89.7 bits (98), Expect = 1e-15 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 111 TCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGC 170 ||||| | ||||| ||||||||||| || |||||| || |||| | |||||||| ||| Sbjct 1058 TCAGTCCTAGTGTAGCTGATCATCCTTTCGGACCAGCTATTGATCATTGCCTTGGTAAGC 999 Query 171 CATTACCTCACCAACTAGCTAATCCGA 197 ||| ||||||||||||||||||| || Sbjct 998 TATTGCCTCACCAACTAGCTAATCAGA 972 >seq7179 Length=60104 Score = 78.8 bits (86), Expect = 2e-12 Identities = 77/97 (79%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||||||||||||||| Sbjct 27728 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 27671 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 98 ||| || |||| ||||| ||||||||||||| ||| Sbjct 27670 TTGCGGAAAATTCTCCACTACTGCCTCCCGTAGAAGT 27634 >seq29810 Length=40436 Score = 77.0 bits (84), Expect = 7e-12 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCT-CCCGTAGGAGT- 98 ||||| ||| |||||| || || |||||||||| |||||||| | ||| || | || Sbjct 22469 GCTGGTTCAACCTTTCGGTCAGTGACCAATATTCCTCACTGCTGGTTTCCCTTATGGGTA 22528 Query 99 --CTGGACCGT-GTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA-CCAGTTACGGAT 154 || | | || || |||| ||| |||| ||||||||||||||| | ||||||| Sbjct 22529 GACTTGGCTGTTGTTTCAGAGCCAATGTGGTCGATCATCCTCTCAGATACGACTACGGAT 22588 Query 155 CGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATA 214 | | | || | | ||| |||||||| || |||| || |||| ||||||||| | | Sbjct 22589 CTTAGGCTAGTTAAGCAATTACCTCTCCTACTACCT-CCCCGA-AGAGGCTCATCCTAAA 22646 Query 215 GCG 217 ||| Sbjct 22647 GCG 22649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1066083471200