Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq478848 183 7e-44 seq330153 114 3e-23 seq960 113 1e-22 seq267867 111 4e-22 seq30846 107 5e-21 seq12061 104 6e-20 seq60615 95.1 3e-17 seq33218 93.3 1e-16 seq272036 86.0 2e-14 seq13601 86.0 2e-14 seq502450 77.0 8e-12 seq14697 77.0 8e-12 seq526505 73.4 1e-10 >seq478848 Length=234 Score = 183 bits (202), Expect = 7e-44 Identities = 124/138 (90%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 281 ATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACT 340 |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 234 ATCTATTTCACTCCCCTC-CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACT 176 Query 341 ATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTT 400 ||||||| | | ||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 175 ATCGGTCGATTACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTT 116 Query 401 CTCGTGCTCCGTCCTACT 418 |||||| ||| |||||| Sbjct 115 CTCGTGTCCCGCCCTACT 98 >seq330153 Length=147 Score = 114 bits (126), Expect = 3e-23 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 ||||||||||||||||||||||| |||||||||| | ||||||||| ||| |||| | Sbjct 146 CCTTTCCCTCACGGTACTAGTTCGCTATCGGTCACATACGAGTATTTAGGCTTAGAGGGT 87 Query 375 GGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| || |||||||| | || | |||| |||| |||||||| Sbjct 86 GGTCCCCCTATGTTCAGACAGAATTACACGTGTTCCGCCCTACTCG 41 >seq960 Length=120999 Score = 113 bits (124), Expect = 1e-22 Identities = 130/171 (76%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||||| |||||| || ||| |||||| | |||||||||||| | | || ||||| Sbjct 99945 CTCCCATTGCTTGGGAGCGTACAGTTTCATGTTCTATTTCACTCTCTGATA-GGAGTTCT 99887 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || ||||||||| ||||| ||||||||||| || ||| |||||||||||||| Sbjct 99886 TTTCACCCTTCCCTCACAATACTACTTCACTATCGGCCACCCAGGAGTATTTAGCCTTGC 99827 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCT-CGTGCTCCGTCCTACTC 419 | | ||||| ||||| || ||| |||| ||||| || | |||||| Sbjct 99826 AAGGGGGTCCTTATTGATTCACAC-AAGATTCTACGTGCCCCATGCTACTC 99777 >seq267867 Length=133 Score = 111 bits (122), Expect = 4e-22 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||| ||||||| || |||||||||| | ||| |||||||||| ||||| ||||||| Sbjct 47 CTCCCACCGCTTGTAAGCTTACGGTTTCATGGTCTTTTTCACTCCC-TCTCCAGGGTTCT 105 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTC 337 |||| || |||||||||||||||||||| Sbjct 106 TTTCACCCTTCCCTCACGGTACTAGTTC 133 >seq30846 Length=10447 Score = 107 bits (118), Expect = 5e-21 Identities = 144/195 (74%), Gaps = 9/195 (5%) Strand=Plus/Minus Query 200 AAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA-ACAAAGTG----GGCTCCC 254 || ||||||||||||||||||||||||||| |||| | | | || |||| Sbjct 8005 AACTCGCTGACCCATTATACAAAAGGTACGTTATCACTTATTCTCATTGAAGAAGCTCTA 7946 Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 ||||||| || | | | |||||||||||||||||| || || ||||||| Sbjct 7945 ACTGCTTATATGATTGCTAGTTCAGGATCTATTTCACT--AGTCATCGACTCTCTTTTCA 7888 Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 |||||||||||||||||| |||||||||| | | || | || |||||||| |||||| Sbjct 7887 CCTTTCCCTCACGGTACT-CTTCACTATCGCT-AAACATTCATACTTAGCCTTTGAGGAT 7830 Query 375 GGTCCCCCCATATTC 389 ||| |||| || ||| Sbjct 7829 GGTTCCCCAATCTTC 7815 >seq12061 Length=55105 Score = 104 bits (114), Expect = 6e-20 Identities = 101/129 (78%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||||||| |||| || |||| ||||| |||||||||||| || | || ||||| Sbjct 52297 CTCCCACTACTTGAGAGCTTACGATTTCATATTCTATTTCACTCTCCGATG-GGAGTTCT 52239 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || || ||||| ||||||| |||||||| ||||| || |||||||||||||| Sbjct 52238 TTTCACCCTTTCCTCATGGTACTACTTCACTATTGGTCACCCAAGAGTATTTAGCCTTGC 52179 Query 370 AGGATGGTC 378 | | ||||| Sbjct 52178 AAGGTGGTC 52170 Score = 98.7 bits (108), Expect = 2e-18 Identities = 100/129 (78%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||||||| |||| || |||| ||||| |||||||||||| || | || ||||| Sbjct 53233 CTCCCACTACTTGAGAGCTTACGATTTCATATTCTATTTCACTCTCCGAT-GGGAGTTCT 53175 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || || |||| ||||||| |||||||| ||||| ||| ||||||||| |||| Sbjct 53174 TTTCACCCTTTGCTCATGGTACTACTTCACTATTGGTCACTCAAGAGTATTTAGTCTTGC 53115 Query 370 AGGATGGTC 378 | | ||||| Sbjct 53114 AAGGTGGTC 53106 >seq60615 Length=7980 Score = 95.1 bits (104), Expect = 3e-17 Identities = 138/191 (72%), Gaps = 7/191 (4%) Strand=Plus/Plus Query 199 TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTG 258 ||||| ||||||||||||| ||||||||||| ||| ||| || | ||| ||| Sbjct 3196 TAAGTTGCTGACCCATTATGCAAAAGGTACGACATCA--TAACTAAAT--ACTCTGTCTG 3251 Query 259 CTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTT 318 |||||| | | | |||||| ||||||||| || || || | ||||| ||| Sbjct 3252 CTTGTAGGATTGCTAGTTCAGGCTCTATTTCA--CCAGTCATCGACTTGCTTTTAAACTT 3309 Query 319 TCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTC 378 ||| |||| ||||| |||||||||| | | | || |||||||||||||||||| Sbjct 3310 TCCTTCACAGTACT-CTTCACTATCGCTAAACATATCATACTTAGCCTTGGAGGATGGTG 3368 Query 379 CCCCCATATTC 389 ||||| ||||| Sbjct 3369 CCCCCGTATTC 3379 >seq33218 Length=24738 Score = 93.3 bits (102), Expect = 1e-16 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 199 TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCTCCCA 255 ||| ||||||||||||||| ||||||||||| |||| | || | | |||| | Sbjct 24302 TAACTCGCTGACCCATTATGCAAAAGGTACGTTGTCATATCATTACTAGAT--ACTCCAA 24245 Query 256 CTGCTTGTACGCATACGGTTTCAGGA-TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 |||||| || | ||| ||||||| |||||||||| | | || ||||| Sbjct 24244 CTGCTTATAGGGTTACTAGTTCAGGATTCTATTTCAC-CAGTTATCTACTTACTTTTTCA 24186 Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 |||||| |||||| |||| || ||||||| | | ||| || ||||| ||||||||| Sbjct 24185 CCTTTCACTCACGTTACT-CTTTACTATCGCTAGATTAGTTATACTTAGCTTTGGAGGAT 24127 Query 375 GGTCCCCCCATATTC 389 ||| ||||||||||| Sbjct 24126 GGTACCCCCATATTC 24112 >seq272036 Length=134 Score = 86.0 bits (94), Expect = 2e-14 Identities = 97/128 (76%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 212 CATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATA- 270 |||| | ||| ||| |||| |||| | || | ||||||||||||| || | Sbjct 8 CATTCTTCAACAGGCACGCGGTCAGAGATCACTTTCCCCTCCCACTGCTTGGGAGCTCAG 67 Query 271 --CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 |||||||| | ||||||||||| ||| || |||||||||||| |||||||||||||| Sbjct 68 CACGGTTTCACGTTCTATTTCACTACCCACTG-GGGGTTCTTTTCACCTTTCCCTCACGG 126 Query 329 TACTAGTT 336 ||||| || Sbjct 127 TACTACTT 134 >seq13601 Length=26023 Score = 86.0 bits (94), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 15/227 (7%) Strand=Plus/Plus Query 186 TTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC--AACAA 243 |||||||| ||| | ||| |||||||||||||||||||| |||||| | | | Sbjct 1899 TTGCCACTTGTGTTAACTTGCTAACCCATTATACAAAAGGTACCTTATCACCCATATCTA 1958 Query 244 AGT---------GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCC 294 | | |||||| | ||||| || | | | |||||| ||||||||| || Sbjct 1959 ATTATTAGTTTCGGGCTCTAAGTGCTTATATGATTGCTAATTCAGGTTCTATTTCA--CC 2016 Query 295 CCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGT 354 || | | |||||| ||||||||||||||||| |||||||||| | | || Sbjct 2017 AGTCATAGACTTACTTTTCATCTTTCCCTCACGGTACT-TTTCACTATCGCT-AAACACA 2074 Query 355 AGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTC 401 || |||||||| ||||||||| |||| || |||| || | |||| Sbjct 2075 CATACTTAGCCTTAGAGGATGGTACCCCTATTTTCAAGCAGAATTTC 2121 >seq502450 Length=276 Score = 77.0 bits (84), Expect = 8e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 || ||||||||| || || ||||| ||||||| |||||||| ||||| || ||||||| Sbjct 1 GGAGTTCTTTTCACCCTTTCCTCATGGTACTACTTCACTATTGGTCACCCAAGAGTATTT 60 Query 362 AGCCTTGGAGGATGGTC 378 ||||||| | | ||||| Sbjct 61 AGCCTTGCAAGGTGGTC 77 >seq14697 Length=37668 Score = 77.0 bits (84), Expect = 8e-12 Identities = 89/119 (75%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||| |||||||| || || ||||| | ||||||||||| || | | |||||| Sbjct 32074 CTCCTACTGCTTGAGAGCTTATGGTTTTATCTTCTATTTCACT-CCATGATAGTGGTTCT 32132 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||| || |||||||| |||| || |||||| | ||||| | ||||||| |||||| Sbjct 32133 TTTCACCCTTCCCTCATGGTAATACTTCACTGTTGGTCACCAAAGAGTATTTTGCCTTG 32191 >seq526505 Length=380 Score = 73.4 bits (80), Expect = 1e-10 Identities = 84/108 (78%), Gaps = 5/108 (5%) Strand=Plus/Minus Query 275 TTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAG 334 |||||||||||||||||| | || || ||||||||| |||||| || | |||||| Sbjct 376 TTCAGGATCTATTTCACT--CGTCATCGACGTTCTTTTCAACTTTCCTTCGCAGTACTA- 320 Query 335 TTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCC 382 | | |||||| | || | |||||||| ||| | ||||||||| |||| Sbjct 319 TGCGCTATCGCTGTGTTA-TAGTATTTTGCC-TAGAGGATGGTTCCCC 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1234747423360