Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq60694 109 3e-22 seq10745 91.5 9e-17 seq395855 80.6 2e-13 seq132370 80.6 2e-13 seq66329 78.8 6e-13 >seq60694 Length=4481 Score = 109 bits (120), Expect = 3e-22 Identities = 95/112 (85%), Gaps = 6/112 (5%) Strand=Plus/Minus Query 13 CCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTA 72 ||||| ||| | | | |||||||||| | || | ||||||||||||||| || |||||| Sbjct 3625 CCGTT-GCCAGCTTCCCAAAGCCAATCCGGAGA--TCTCACTAAGCCATT-CAATCGGTA 3570 Query 73 GTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||| ||||||||||| |||||||||||||||||||||||| ||||| |||| Sbjct 3569 GTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGTGAGCT 3520 >seq10745 Length=5470 Score = 91.5 bits (100), Expect = 9e-17 Identities = 91/112 (81%), Gaps = 6/112 (5%) Strand=Plus/Plus Query 13 CCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTA 72 ||||| ||||| ||| || | | || || |||| |||||||| | | ||| |||||| Sbjct 1318 CCGTT-GCCGGCTCCCGAACGTCGATCCC--AAGTGCTCACTAACGC-TATCAATCGGTA 1373 Query 73 GTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||| ||||| ||||| |||||||||||||||||||||||| |||||| |||| Sbjct 1374 GTA-GCGACAGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 1423 >seq395855 Length=171 Score = 80.6 bits (88), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 3/70 (4%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||||||||| || ||||| ||| ||||||||||| |||||||||| Sbjct 105 TCCGAAGGC-CTCACTAAGCCATT-CAATCGGTTGTA-GCGACGGGCGGTGTGTACAAAG 161 Query 99 GGCAGGGACG 108 |||||||||| Sbjct 162 GGCAGGGACG 171 >seq132370 Length=109 Score = 80.6 bits (88), Expect = 2e-13 Identities = 56/61 (92%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||||||||| || |||||| || ||||||||||| |||||||||||||||||||| Sbjct 59 CTCACTAAGCCATT-CAATCGGTACTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 2 Query 109 T 109 | Sbjct 1 T 1 >seq66329 Length=1381 Score = 78.8 bits (86), Expect = 6e-13 Identities = 56/62 (90%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 63 TCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||| ||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||| | Sbjct 747 TCAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGTCAGGGACGTAAT-CAACGCATG 804 Query 123 CT 124 || Sbjct 805 CT 806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299243599700