Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq60694 185 1e-44 seq163608 132 6e-29 seq407179 118 1e-24 seq34752 104 3e-20 seq203025 100 3e-19 seq324947 98.7 1e-18 seq364548 96.9 4e-18 seq386601 95.1 1e-17 seq355877 86.0 7e-15 seq325808 84.2 3e-14 seq278386 78.8 1e-12 seq4382 78.8 1e-12 seq397744 77.0 4e-12 >seq60694 Length=4481 Score = 185 bits (204), Expect = 1e-44 Identities = 160/193 (83%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 3115 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 3056 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||| ||||||||||||||||| | || Sbjct 3055 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCGACA 2996 Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGC 182 | ||| |||| ||||| | ||||| ||| ||| ||| | || |||||| ||| Sbjct 2995 CGCCCAGTGAAGGGCATGC-GGCTCCCCAGAAGGAAAGGCCCGGCCGGACCAGTACACGC 2937 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 2936 GGTGAGGCGGACC 2924 >seq163608 Length=113 Score = 132 bits (146), Expect = 6e-29 Identities = 91/103 (88%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| Sbjct 103 CTAGAAACCAACAAAATAGAACCGCTCGTCCTATTCTATTATTCCATGTTAATGTATTCG 44 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAA 108 || | ||||||||||||| |||||||||| |||| |||||| Sbjct 43 AGCAAAGGCCTGCTTTGAACGCTCTAATTTTTTCAAAGTAAAA 1 >seq407179 Length=176 Score = 118 bits (130), Expect = 1e-24 Identities = 88/102 (86%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||| Sbjct 75 CTAGAGACCAACACAATAGGCGTGCACGTCCTATTCTATTATTCCATGCTAAGATATTCG 134 Query 66 GGC--GTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTA 105 ||| | |||||||||||||||||||||||| |||| ||| Sbjct 135 GGCAAACATGCCTGCTTTGAACACTCTAATTTTTTCAAAGTA 176 >seq34752 Length=7499 Score = 104 bits (114), Expect = 3e-20 Identities = 89/106 (84%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | |||||| ||||||||||||||||||||||| Sbjct 6675 CTAGAAACCAACAAAATAGAACCGAA-GTCCTAAATTATTATTCCATGCTAATGTATTCA 6617 Query 66 G-GCGTAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || ||| |||||||| |||||||||||||| |||| ||||||| Sbjct 6616 TAGCATAAAGCCTGCTTGAAACACTCTAATTTTTTCAAAGTAAAAG 6571 >seq203025 Length=120 Score = 100 bits (110), Expect = 3e-19 Identities = 96/121 (79%), Gaps = 3/121 (2%) Strand=Plus/Plus Query 83 AACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACACCAATGAA--GGCAT 140 |||||||||||||| |||| |||||| |||||||||| | ||| || | || | ||| Sbjct 1 AACACTCTAATTTTTTCAAAGTAAAAATCCTGGTTCCCCAACACGCCGAGTAAACGACAT 60 Query 141 ACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCCGTGAGGCGGACCATAGC 200 | |||||||||||||||| | ||| || |||||| | ||||||||||||||| ||| Sbjct 61 GCTGGCTCACCAAGAGGTAAGATCCGGTCATTCAGTACACACCGTGAGGCGGACCA-AGC 119 Query 201 A 201 | Sbjct 120 A 120 >seq324947 Length=146 Score = 98.7 bits (108), Expect = 1e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 97 CTCAAGGTAAAAGTCCTGGTTCCTCCGCACACC-AATGAAG-GCATACGGGCTCACCAAG 154 |||||||||||| |||||||||| || |||||| ||| ||| |||| || ||||||||| Sbjct 146 CTCAAGGTAAAATTCCTGGTTCCACCCCACACCCAATAAAGAGCATGAGGTCTCACCAAG 87 Query 155 AGGTAGGGCTGGGTAATGCAGTACTCGCCGTGAGGCGGACCATAGCACCCAGCCCGAGTT 214 ||||| |||| | | ||||| | |||| ||||||||||| | || ||||||| | Sbjct 86 AGGTAAGGCTCAGCAGAATAGTACACACCGTAAGGCGGACCATCCCGCCAAGCCCGAAGT 27 Query 215 TCG 217 ||| Sbjct 26 TCG 24 >seq364548 Length=158 Score = 96.9 bits (106), Expect = 4e-18 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60 |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| || Sbjct 76 CGTCTCTAGAAACCAACAAAATAGAAACGCACGCCCTATTTTATTATTCCATGCTAACGT 17 Query 61 ATTCGGGCGTAAGCCT 76 ||||| || | |||| Sbjct 16 ATTCGAGCAAAGGCCT 1 >seq386601 Length=166 Score = 95.1 bits (104), Expect = 1e-17 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 12 ACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGT 70 ||||||| |||||| | | ||||||| ||||||||||||||||||||| | |||| Sbjct 77 ACCAACACAATAGGACCAGA-GTCCTATCACGTTATTCCATGCTAATGTATTCAGAGCGT 135 Query 71 AAGCCTGCTTTGAACACTCTAATTTTCTCAA 101 | |||||||||||||||||||||||| |||| Sbjct 136 AGGCCTGCTTTGAACACTCTAATTTTTTCAA 166 >seq355877 Length=155 Score = 86.0 bits (94), Expect = 7e-15 Identities = 67/79 (85%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 87 CTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACACCAATGAA--GGCATACGG 144 |||||||||| |||| |||||| |||||||||| ||||||||| | || | ||||||| Sbjct 155 CTCTAATTTTTTCAAAGTAAAATTCCTGGTTCCCCCGCACACCGAGTAAACGACATACGG 96 Query 145 GCTCACCAAGAGGTAGGGC 163 |||||||| |||||| ||| Sbjct 95 GCTCACCAGGAGGTAAGGC 77 >seq325808 Length=146 Score = 84.2 bits (92), Expect = 3e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 97 CTCAAGGTAAAAGTCCTGGTTCCTCCGCACACCAA-TGAAG-GCATACGGGCTCACCAAG 154 |||||||||||| |||||||||| || |||||| | | ||| |||| || ||||||||| Sbjct 146 CTCAAGGTAAAATTCCTGGTTCCACCCCACACCCAGTAAAGAGCATGAGGTCTCACCAAG 87 Query 155 AGGTAGGGCTGGGTAATGCAGTACTCGCCGTGAGGCGGACCATAGCACCCAGCCCGAGTT 214 ||||| ||| || ||||| | |||| ||||||||||| | || |||||| | Sbjct 86 AGGTAAGGCCCGGCCGGATAGTACACACCGTAAGGCGGACCATCCCGCCGGGCCCGAAGT 27 Query 215 TCG 217 ||| Sbjct 26 TCG 24 >seq278386 Length=135 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/60 (90%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 75 CTAGAAACCAACAAAATAGAACCTCT-GTCCTATTCTATTATTCCATGCTAATGTATTCG 133 >seq4382 Length=18589 Score = 78.8 bits (86), Expect = 1e-12 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 7481 CCAACACAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 7539 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 || |||||||| ||||||||||| |||| |||| Sbjct 7540 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAA 7574 >seq397744 Length=171 Score = 77.0 bits (84), Expect = 4e-12 Identities = 73/88 (83%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 75 CTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG-TTCCTCCG-CACACCAAT 132 |||||||||||||||||||||| |||| ||||| ||||||| || ||| | ||| ||||| Sbjct 1 CTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGTCCTGGTTTGCTCTGACAC-CCAAT 59 Query 133 GAAGG-CATACGGGCTCACCAAGAGGTA 159 |||| ||| | | |||||| |||||| Sbjct 60 AAAGGACATCAGAGTTCACCAGGAGGTA 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592017658110