Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq507189 132 1e-28 seq436895 118 2e-24 seq60615 78.8 2e-12 >seq507189 Length=289 Score = 132 bits (146), Expect = 1e-28 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 || ||||||||| | | |||| |||||| ||||| || |||| | | ||| || || Sbjct 278 CCGCAGCTTCGGTGACTGGCTTA-GCCCCGTTACATCTTCCGCGCAGGACGACTCGATCA 220 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||| ||||| || |||||||||||| |||||||| ||||| ||| | Sbjct 219 GTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGACTGTTTT 160 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 || |||| || ||| ||||| || || ||| ||| ||||||||| | |||||| Sbjct 159 AGCCTTCCCACTTCGTTTTCCACTTAGCCA-ATCTTTGGGACCTTAGCTGGCGGTCTGGG 101 Query 387 CTGTTTCCCTCT 398 ||||||||||| Sbjct 100 TTGTTTCCCTCT 89 >seq436895 Length=193 Score = 118 bits (130), Expect = 2e-24 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 || |||||||||| | || |||||||||| ||||| ||| ||||||||||| ||||| Sbjct 1 GGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTGAGCACTCCCACATCCTTTGCCACT 60 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || ||| || |||||||||||||||| |||||||||||||||||||| Sbjct 61 TAGCGGCCATTTGGGGGCCTTAGCTGATGGTCTGGGCTGTTTCCCTCTCG 110 >seq60615 Length=7980 Score = 78.8 bits (86), Expect = 2e-12 Identities = 128/178 (72%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 227 TTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTT 286 ||||| |||| || || ||||||| || ||||| |||||| |||||| |||| Sbjct 2613 TTAAGACCCGGTATATCTTCGGCGCATGCGACCTAGACCACTGAGCTGTTACGCTTTCTT 2672 Query 287 TCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT-ACGCAACTCCACATCCTT-- 343 | || ||||| |||||||| || || || ||| ||| | | | || | || ||||| Sbjct 2673 TAAATGATGGACGCTTCCAATCCCACATCATGGCTGTATCAGGTCACAC-ACTTCCTTAA 2731 Query 344 TCCCACTGAGTCACCA-CTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | |||| |||| | ||||||| | ||| || || | |||||||||||||||||| Sbjct 2732 TTTCACTT-GTCAATATCTTAGGGACTTTAACTCATTGTTTGGGCTGTTTCCCTCTCG 2788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1171100648960