Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1226 100 2e-19 seq21735 84.2 2e-14 seq462810 75.2 9e-12 >seq1226 Length=18110 Score = 100 bits (110), Expect = 2e-19 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| | | | ||| |||| ||||||| ||||||| | Sbjct 12659 CGAGTTGCAGGCTACAATCCGAATTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCAG 12600 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| ||||||| ||||||| |||| ||| | || ||| Sbjct 12599 GATCGCGACCCTTTGTCCCGGGCATTGTAGCACGTGTGTTGCCCAGGGCATCAAGGGCAT 12540 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||| || |||||| ||||||||||||| || |||| Sbjct 12539 GATGACTTCACATCATCCTCACCTTCCTCCGGCTTATCAC 12500 >seq21735 Length=16192 Score = 84.2 bits (92), Expect = 2e-14 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||| ||| ||||||| | | | | || | | ||| || ||||||| |||||| || Sbjct 2191 GAGTTTCAGCCTACAATTAGAATTCAGGACA-AGTTTTTGAAGTTAGCTCACCCTCGTGG 2133 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||| | ||||||| |||| |||||||| ||| Sbjct 2132 GATTGCGACCCTTTGTCCCAGTCATTATGACACGTGTGTTGCCCAGGGCATAAGGGGCAT 2073 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||||| |||| |||||||||||| || |||| Sbjct 2072 GATGACTTGACGTGATCCTCACCTTCCTCCGACTTATCAC 2033 >seq462810 Length=215 Score = 75.2 bits (82), Expect = 9e-12 Identities = 51/56 (91%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 106 TACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||| |||||||||||||| ||||||||||||| || | |||| Sbjct 72 TACCCATAAGGGCCATGCGGACTTGACGTCAT-CCCACCTTCCTCCAGTATATCAC 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413775782550