Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq464116 134 2e-29 seq974 123 4e-26 seq19679 113 7e-23 seq415145 86.0 1e-14 >seq464116 Length=216 Score = 134 bits (148), Expect = 2e-29 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 152 GGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCA 211 |||||||||| | |||||| || ||||| | |||||| | | | |||||| |||| Sbjct 211 GGTTGAGCCCGGGGATTTCACGTCAGACTTACAAAACCGCCTGCGCACGCTTTACGCCCA 152 Query 212 ATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCC 271 ||| |||| ||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 151 GTAATTCCGATTAACGCTCGCACCCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCC 92 Query 272 GTGGCTTATTCCTCAGGTA 290 | |||||||| ||||||| Sbjct 91 GGTGCTTATTCTTCAGGTA 73 >seq974 Length=77894 Score = 123 bits (136), Expect = 4e-26 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||| || |||||| | | ||||||| || |||||| |||||| | | Sbjct 54927 GCTTTCGTCCCTTAGTGTCAGTGTCGGCCCAGCAAAGTGCTTTCGCCGTTGGTGTCCTTT 54986 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 || ||||||||||||||| || ||| | |||||| |||| || | | |||| || Sbjct 54987 TCGATCTCTACGCATTTCACCACTCCACCGGAAATTCCTTCTGCCCCTACCGTACTCCAG 55046 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| || ||| | | |||| Sbjct 55047 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGAGATTTGATGGCAAACTTAAAA 55106 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| | |||| | |||||||||||||||| ||| |||||| Sbjct 55107 AGCCACCTACAGACGCTTTACGCTCAATCATTCCGGATAACGCTTGCATCCTCAGTATTA 55166 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCC 271 ||||| |||||||||| |||||||| Sbjct 55167 CCGCGACTGCTGGCACAGAGTTAGCC 55192 >seq19679 Length=43052 Score = 113 bits (124), Expect = 7e-23 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | ||| || | ||||| || |||||| | |||||| ||| Sbjct 39164 GGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCC 39105 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | |||||||||||||||| ||| |||||||||||||||||||||| ||||||| Sbjct 39104 AATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAGC 39045 Query 271 CGTGGCTTATTCCTCAGGTA 290 || ||||||||| ||| || Sbjct 39044 CGATGCTTATTCCCCAGATA 39025 >seq415145 Length=180 Score = 86.0 bits (94), Expect = 1e-14 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 202 TTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCAC 261 ||||| |||||| | ||||||||||||| || || ||| ||||||||||||||||||| Sbjct 180 TTTACGCCCAATCATTCCGGATAACGCTCGCATCCCCCGTCTTACCGCGGCTGCTGGCAC 121 Query 262 GTAG-TTAGCCGTGGCTTA-TTCCTCAGGTA 290 | | ||||||| ||||| ||| ||||||| Sbjct 120 GGGGTTTAGCCGATGCTTAGTTCTTCAGGTA 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 824368674465