Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq447139 167 2e-39 seq412463 127 1e-27 seq455547 100 2e-19 seq30846 87.8 1e-15 seq8560 84.2 2e-14 seq40279 82.4 5e-14 seq20556 82.4 5e-14 seq12220 75.2 8e-12 seq40736 73.4 3e-11 >seq447139 Length=201 Score = 167 bits (184), Expect = 2e-39 Identities = 121/140 (86%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||| Sbjct 180 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTA 121 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | |||| | ||||||| | |||||| ||| |||||||||||||| Sbjct 120 CTTTCGTACCTGCTCGACTTGTCGGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTAT 61 Query 121 CACTACGATTTCCGACCGTA 140 | ||||| |||||||||| Sbjct 60 TAGCACGATGTCCGACCGTA 41 >seq412463 Length=179 Score = 127 bits (140), Expect = 1e-27 Identities = 113/140 (81%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 157 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGA 98 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||||||| ||| || ||| |||||||||||| | Sbjct 97 CTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCT 38 Query 121 CAC-TACGATTTCCGACCGT 139 || ||| ||||||||||| Sbjct 37 AACAGACGGTTTCCGACCGT 18 >seq455547 Length=208 Score = 100 bits (110), Expect = 2e-19 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| | | ||||||||||||||| || Sbjct 74 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTATATCCGT 133 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | | || |||| || |||||| ||||| | | ||||| || Sbjct 134 CTTTCGACCCTGCTCGACTAGTCAGTCTCACAGTCAAGCCCACTTCTACTATTGCGCT 191 >seq30846 Length=10447 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||| | |||||||||||| |||||| | |||||||||||||| | ||| Sbjct 9669 TAACTTTTATTCCTTGAGCGATGGCTTTTCCATAAAATACCACCGGATCACTAAGTCCTA 9610 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 ||| || ||||||| | |||| ||||||| | ||||| ||| |||| || |||| Sbjct 9609 CTTACGTATCTGCTTGACTTGTCAGTCTCGCAGTTAAGCATGCTTATGCCTTTACACT 9552 >seq8560 Length=29517 Score = 84.2 bits (92), Expect = 2e-14 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATT-CATAGCCACCGGATCACTATGACCT 59 || ||||||| ||||||||||| ||| |||||| | || | ||||||||||||| ||| Sbjct 12458 TAGCTTTTATTCGTTGAGCGATAGCCGTTCCATAACGTA-CTACCGGATCACTATACCCT 12400 Query 60 GCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTA 119 ||| || | ||| || | |||| | ||| ||| | |||| ||||||| ||| |||| Sbjct 12399 ACTTACGTACCTGTTCGACTTGTCGGTCTTGCAGTTAAGCTTGCTTTTGCTATTACACTT 12340 Query 120 TCACT 124 | ||| Sbjct 12339 TTACT 12335 >seq40279 Length=2648 Score = 82.4 bits (90), Expect = 5e-14 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||| | ||||||||||||| |||||| | |||||||||||||||| ||| Sbjct 233 TAACTTTTATTCCTTGAGCGATGGCCGTTCCATATCGAACCACCGGATCACTATGTCCTA 292 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 ||| || | ||| | | |||| ||| || | |||||||||| | |||| |||| Sbjct 293 CTTGCGTAGCTGATTGATTTGTCAATCTTTCAGTAAAGCACACTTATATCATTACACT 350 >seq20556 Length=45861 Score = 82.4 bits (90), Expect = 5e-14 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||| | ||||||||||||| |||||| | |||||||||||||||| ||| Sbjct 1240 TAACTTTTATTCCTTGAGCGATGGCCGTTCCATATCGAACCACCGGATCACTATGTCCTA 1181 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 ||| || | ||| | | |||| ||| || | |||||||||| | |||| |||| Sbjct 1180 CTTGCGTAGCTGATTGATTTGTCAATCTTTCAGTAAAGCACACTTATATCATTACACT 1123 Score = 82.4 bits (90), Expect = 5e-14 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||| | ||||||||||||| |||||| | |||||||||||||||| ||| Sbjct 42781 TAACTTTTATTCCTTGAGCGATGGCCGTTCCATATCGAACCACCGGATCACTATGTCCTA 42722 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 ||| || | ||| | | |||| ||| || | |||||||||| | |||| |||| Sbjct 42721 CTTGCGTAGCTGATTGATTTGTCAATCTTTCAGTAAAGCACACTTATATCATTACACT 42664 >seq12220 Length=6794 Score = 75.2 bits (82), Expect = 8e-12 Identities = 89/121 (74%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||| ||||||||||||| |||||| | | |||||||||||||| | ||| Sbjct 5667 TAACTTTTATTTCTTGAGCGATGGCCTATCCATTTAGAACCACCGGATCACTAAGTCCTA 5608 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 ||| || | |||| | | || | ||| || ||||||| || |||| || |||| | Sbjct 5607 CTTGCGTACCTGCGCGACTTATAAGTCTAACAGTCAAGCATGTTTATGCCTTTACACTTT 5548 Query 121 C 121 | Sbjct 5547 C 5547 >seq40736 Length=13744 Score = 73.4 bits (80), Expect = 3e-11 Identities = 87/118 (74%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||| | ||||||||||||| |||||| | |||||||||||||||| ||| Sbjct 2763 TAACTTTTATTCCTTGAGCGATGGCCGTTCCATATCGAACCACCGGATCACTATGTCCTA 2704 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 ||| || | ||| | | |||| ||| || | ||||| ||| | |||| |||| Sbjct 2703 CTTGCGTAACTGATTGACTTGTCAGTCTTTCAGTAAAGCATGCTTCTATCATTACACT 2646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350178680500