Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq60694 255 6e-66 seq278386 187 3e-45 seq163608 181 1e-43 seq34752 174 2e-41 seq364548 170 2e-40 seq407179 168 7e-40 seq386601 143 3e-32 seq327388 91.5 2e-16 seq1178 89.7 5e-16 seq358064 80.6 3e-13 >seq60694 Length=4481 Score = 255 bits (282), Expect = 6e-66 Identities = 155/163 (95%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 3002 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 3061 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 3062 CATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 3120 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAAT 163 |||||||||| |||| ||||||||||||| |||||||||||| Sbjct 3121 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAAT 3163 >seq278386 Length=135 Score = 187 bits (206), Expect = 3e-45 Identities = 125/137 (91%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 53 CTCGAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT 112 ||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||| Sbjct 135 CTCGAATACATTAGCATGGAATAATAGAATAGGACA-GAGGTTCTATTTTGTTGGTTTCT 77 Query 113 AGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGG 172 |||||||| |||||||| |||| ||||||||||||| ||| |||||||||||||| ||| Sbjct 76 AGGACCGCT-GTAATGATTAATAGGGATAGTCGGGGGCGTCCGTATTCAATTGTCAGAGG 18 Query 173 TGAAATTCTTGGATTTA 189 ||||||||||||||||| Sbjct 17 TGAAATTCTTGGATTTA 1 >seq163608 Length=113 Score = 181 bits (200), Expect = 1e-43 Identities = 106/110 (96%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGG 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAACATGG 60 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC 121 ||||||||||||||||| ||||||||||||||| ||||||||||| |||| Sbjct 61 AATAATAGAATAGGACGAGCGGTTCTATTTTGTTGGTTTCTAGGATCGCC 110 >seq34752 Length=7499 Score = 174 bits (192), Expect = 2e-41 Identities = 149/179 (83%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT-TGCTC-GAATACATTACCA 68 ||||||||||||||||||||||| ||| |||||||| || |||| |||||||||| || Sbjct 6571 CTTTTACTTTGAAAAAATTAGAGTGTTTCAAGCAGGCTTTATGCTATGAATACATTAGCA 6630 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 |||||||||| |||||| | |||||||||||||| |||||||||||| | |||||| Sbjct 6631 TGGAATAATAATTTAGGACTT-CGGTTCTATTTTGTTGGTTTCTAGGACTGAA-GTAATG 6688 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || ||| ||||||| ||||||| |||||||| | || |||||||||||| ||||| Sbjct 6689 ATTGATAGGGATAGTTGGGGGTGCTAGTATTCAGCGGCCAGAGGTGAAATTCTCGGATT 6747 >seq364548 Length=158 Score = 170 bits (188), Expect = 2e-40 Identities = 126/146 (86%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 44 AGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 103 |||||||||||||||||| ||| |||||||||||| |||||| |||||| |||||||||| Sbjct 1 AGGCCTTTGCTCGAATACGTTAGCATGGAATAATAAAATAGGGCGTGCGTTTCTATTTTG 60 Query 104 TAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAAT 163 | ||||||||| || ||| |||||| || | | | ||||||||| |||||||||| | Sbjct 61 TTGGTTTCTAGAGACG-CCGCAATGATTAACAGGAACAGTCGGGGGCATCAGTATTCAGT 119 Query 164 TGTCAAAGGTGAAATTCTTGGATTTA 189 ||||| |||||||||||||||||||| Sbjct 120 TGTCAGAGGTGAAATTCTTGGATTTA 145 >seq407179 Length=176 Score = 168 bits (186), Expect = 7e-40 Identities = 145/177 (82%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 15 TACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT--TTGCTCGAATACATTACCATGGA 72 ||||||||||||||||||| ||||||||||||| | |||| |||||| ||| |||||| Sbjct 176 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCATGTTTGCCCGAATATCTTAGCATGGA 117 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 ||||||||||||||||||| ||||| ||| ||| |||||| | |||||||||| | Sbjct 116 ATAATAGAATAGGACGTGCACGCCTATTGTGTTGGTCTCTAGGTGTG-CCGTAATGATGA 58 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 ||| || || ||||| | ||||||||||| | |||||||||||||||||||| Sbjct 57 ATAGGGGCGGTTGGGGGCATTTGTATTCAATTGCTAGAGGTGAAATTCTTGGATTTA 1 >seq386601 Length=166 Score = 143 bits (158), Expect = 3e-32 Identities = 135/168 (80%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 19 TTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAAT 77 ||||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||| Sbjct 166 TTGAAAAAATTAGAGTGTTCAAAGCAGGCCTACGCTCTGAATACATTAGCATGGAATAAC 107 Query 78 AGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACG 137 ||||||| | ||| ||||| ||| ||| | |||||| |||||||| |||| | Sbjct 106 GTGATAGGAC-TCTGGTCCTATTGTGTTGGTCTTCGGGACCGGA-GTAATGATTAATAGG 49 Query 138 GATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || ||| |||| | | ||||| ||||||| |||||||||||||||| Sbjct 48 GACAGTTGGGGATATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGA 1 >seq327388 Length=146 Score = 91.5 bits (100), Expect = 2e-16 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 108 TTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTC 167 |||||||||||||| |||||||| |||| ||| ||| |||| | |||||| | ||||| Sbjct 1 TTTCTAGGACCGCC-GTAATGATTAATAGGGACAGTTGGGGACATTAGTATTGAGTTGTC 59 Query 168 AAAGGTGAAATTCTTGGATTTA 189 | |||||||||||||||||||| Sbjct 60 AGAGGTGAAATTCTTGGATTTA 81 >seq1178 Length=65821 Score = 89.7 bits (98), Expect = 5e-16 Identities = 132/182 (73%), Gaps = 5/182 (3%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||| ||||||||||||| | |||||||| |||| ||| | |||||||| || Sbjct 54553 CTGTTACTTGGAAAAAATTAGAGTGCTCAAAGCAAGCCTACGCTTTGGATACATTAGCAC 54612 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGACCGCCCGTAATG 128 ||||| ||| || | | | ||||| ||| || ||| || | | |||||| Sbjct 54613 AAAATAACTTCATAAGATTTAAG-TCCTATTGTGTTGGCCTTCGAGATCAGA--GTAATG 54669 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 ||| | | | | ||||||||| | ||||| || |||| ||||||||||||| ||||| Sbjct 54670 ATATACAAGAAAAGTCGGGGGCATTTGTATTTCATAGTCAGAGGTGAAATTCTTCGATTT 54729 Query 189 AT 190 || Sbjct 54730 AT 54731 >seq358064 Length=155 Score = 80.6 bits (88), Expect = 3e-13 Identities = 92/121 (76%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG-TA 125 ||||||||||||||||| || | |||||||||||||| ||||| || || | | || Sbjct 152 CATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAGGTA 94 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| |||| ||||| ||||| | ||||| || | |||||||||||||||| Sbjct 93 ATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGA 34 Query 186 T 186 | Sbjct 33 T 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509262501600