Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq447139 178 1e-42 seq412463 120 3e-25 seq455547 104 2e-20 seq30846 91.5 1e-16 seq12220 91.5 1e-16 seq40736 82.4 7e-14 seq40279 82.4 7e-14 seq20556 82.4 7e-14 seq426249 78.8 9e-13 seq13601 78.8 9e-13 seq8560 78.8 9e-13 >seq447139 Length=201 Score = 178 bits (196), Expect = 1e-42 Identities = 133/156 (85%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||| Sbjct 168 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTACTTTCGTACCTG 109 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| ||||||||| |||| |||||||||||||||||| ||||||||| Sbjct 108 CTCGACTTGTCGGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATTAGCACGATGTC 49 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| |||| ||||||| ||||||||||| Sbjct 48 CGACCGTACCTAGCGTACCTTCGAACTCCTCCGTTA 13 >seq412463 Length=179 Score = 120 bits (132), Expect = 3e-25 Identities = 104/128 (81%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | |||||||||||||||||||| |||||| ||| Sbjct 145 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 86 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT-AACCTCACGATGT 142 ||||| |||| ||||||||||| || ||||||||||||||||| | | ||| | | Sbjct 85 CTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCTAACAGACGGTTT 26 Query 143 CCGACCGT 150 |||||||| Sbjct 25 CCGACCGT 18 >seq455547 Length=208 Score = 104 bits (114), Expect = 2e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | |||||||||||||||||| || |||||| ||||| Sbjct 87 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTATATCCGTCTTTCGACCCTGC 146 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| |||| |||| |||||||||| ||| | | ||||| || Sbjct 147 TCGACTAGTCAGTCTCACAGTCAAGCCCACTTCTACTATTGCGCT 191 >seq30846 Length=10447 Score = 91.5 bits (100), Expect = 1e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||| |||||| | ||||||||||||||| | ||| ||| || | |||| Sbjct 9656 TTGAGCGATGGCTTTTCCATAAAATACCACCGGATCACTAAGTCCTACTTACGTATCTGC 9597 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 | || |||| ||||||||| |||| ||||||||| || |||| || Sbjct 9596 TTGACTTGTCAGTCTCGCAGTTAAGCATGCTTATGCCTTTACACTTAC 9549 >seq12220 Length=6794 Score = 91.5 bits (100), Expect = 1e-16 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 ||||||||||||| |||||| |||||||||||||||||| | ||| ||| || |||||| Sbjct 5654 TTGAGCGATGGCCTATCCATTTAGAACCACCGGATCACTAAGTCCTACTTGCGTACCTGC 5595 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||| | | ||| ||||||||| | ||||||| || |||| Sbjct 5594 GCGACTTATAAGTCTAACAGTCAAGCATGTTTATGCCTTTACACT 5550 >seq40736 Length=13744 Score = 82.4 bits (90), Expect = 7e-14 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 ||||||||||||| |||||| ||||||||||||||||||| ||| ||| || | ||| Sbjct 2750 TTGAGCGATGGCCGTTCCATATCGAACCACCGGATCACTATGTCCTACTTGCGTAACTGA 2691 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 | || |||| ||| |||| |||| |||| | |||| |||| Sbjct 2690 TTGACTTGTCAGTCTTTCAGTAAAGCATGCTTCTATCATTACACT 2646 >seq40279 Length=2648 Score = 82.4 bits (90), Expect = 7e-14 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 ||||||||||||| |||||| ||||||||||||||||||| ||| ||| || | ||| Sbjct 246 TTGAGCGATGGCCGTTCCATATCGAACCACCGGATCACTATGTCCTACTTGCGTAGCTGA 305 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 | || |||| ||| |||| |||| ||||| |||| |||| Sbjct 306 TTGATTTGTCAATCTTTCAGTAAAGCACACTTATATCATTACACT 350 >seq20556 Length=45861 Score = 82.4 bits (90), Expect = 7e-14 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 ||||||||||||| |||||| ||||||||||||||||||| ||| ||| || | ||| Sbjct 1227 TTGAGCGATGGCCGTTCCATATCGAACCACCGGATCACTATGTCCTACTTGCGTAGCTGA 1168 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 | || |||| ||| |||| |||| ||||| |||| |||| Sbjct 1167 TTGATTTGTCAATCTTTCAGTAAAGCACACTTATATCATTACACT 1123 Score = 82.4 bits (90), Expect = 7e-14 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 ||||||||||||| |||||| ||||||||||||||||||| ||| ||| || | ||| Sbjct 42768 TTGAGCGATGGCCGTTCCATATCGAACCACCGGATCACTATGTCCTACTTGCGTAGCTGA 42709 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 | || |||| ||| |||| |||| ||||| |||| |||| Sbjct 42708 TTGATTTGTCAATCTTTCAGTAAAGCACACTTATATCATTACACT 42664 >seq426249 Length=187 Score = 78.8 bits (86), Expect = 9e-13 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 32 ATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCC 91 |||||| |||||| |||||||||||||||||| | ||| ||| || |||||| ||| Sbjct 1 ATGGCCTATCCATTTAGAACCACCGGATCACTAAGTCCTACTTGCGTACCTGCGCGACTT 60 Query 92 GTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 | | ||| ||||||||| | ||||||| || |||| Sbjct 61 ATAAGTCTAACAGTCAAGCATGTTTATGCCTTTACACT 98 >seq13601 Length=26023 Score = 78.8 bits (86), Expect = 9e-13 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 32 ATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCC 91 |||||| |||||| |||||||||||||||||| | ||| ||| || |||||| ||| Sbjct 1 ATGGCCTATCCATTTAGAACCACCGGATCACTAAGCCCTACTTACGTACCTGCGCGACTT 60 Query 92 GTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 | | ||| |||||||||| | || |||| || |||| Sbjct 61 ATAAGTCTAGCAGTCAAGCATGTTTTTGCCTTTACACT 98 >seq8560 Length=29517 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||| ||| |||||| | || ||||||||||||| ||| ||| || ||||| Sbjct 12446 GTTGAGCGATAGCCGTTCCATAACGTACTACCGGATCACTATACCCTACTTACGTACCTG 12387 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| ||| ||| ||||| |||| |||| ||| ||| |||| Sbjct 12386 TTCGACTTGTCGGTCTTGCAGTTAAGCTTGCTTTTGCTATTACACT 12341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471067813980