Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq28311 194 3e-47 seq13774 179 6e-43 seq4771 168 1e-39 seq15435 161 2e-37 seq62886 141 1e-31 seq538277 138 2e-30 seq265213 125 1e-26 seq154190 123 4e-26 seq2024 116 6e-24 seq207021 111 2e-22 seq16368 93.3 7e-17 seq535561 86.0 1e-14 seq8560 82.4 1e-13 >seq28311 Length=11406 Score = 194 bits (214), Expect = 3e-47 Identities = 203/264 (77%), Gaps = 7/264 (3%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC---TATGCACTTGG 73 ||||||||| ||| || |||| | || | || ||| |||| | |||| | || Sbjct 765 CTTAGATGCTTTCGGCAGTTATTCGCTCTGCAATTGGCTACCCAACGTTTATGG--TGGG 822 Query 74 CAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTC 133 || | ||||||| || |||||| |||| ||||||||||| ||||||| ||| || || Sbjct 823 CACGATAACTGGTACAATAGAGGTGCGTCCTTCCCGGTCCTCCCGTACTAGGGAAAGGTC 882 Query 134 CTCTCAAATTTCCTACGCCCACGACGGATAGG--GACCGAACTGTCTCGCGACGTTCTGA 191 ||||||| || || ||||| |||||| |||||||||||||| ||| ||||||| Sbjct 883 CTCTCAATGCTCTAACACCCACACCGGATATATAGACCGAACTGTCTCACGATGTTCTGA 942 Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||| ||| ||| || |||||||||||||||| |||||||||||| || |||| ||||| Sbjct 943 ACCCAACTCACGTACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACATACTACAGCC 1002 Query 252 CCAGGATGAGACGAGCCGACATCG 275 ||||| | || ||| |||||||| Sbjct 1003 CCAGGTGGTGAAGAGTCGACATCG 1026 >seq13774 Length=29585 Score = 179 bits (198), Expect = 6e-43 Identities = 203/271 (75%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| |||||| |||| |||| ||| || || Sbjct 5516 GAGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCACTCCACACTTGGCTACCTAG 5457 Query 62 CTATGCACTTG-GCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 || | | || ||| | |||| || ||| |||| | |||| || |||||||||||| Sbjct 5456 CTTTTACCATGAGCATGATAACTAGTACACTAGAGATGCGTCCTTCTTGGTCCTCTCGTA 5397 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| ||| || ||||||||| || | ||| || || ||| |||||||| |||||| Sbjct 5396 CTAGGGAAAGGTCCTCTCAATACTCTAATGCCTACATCGAATATGGACCGAATTGTCTCA 5337 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||| |||||||||||||| | | || |||||||| ||||||| |||||||||||| || Sbjct 5336 CGACATTCTGAACCCAGCTTACATACCACTTTAATGAGCGAACAACCCAACCCTTGGAAC 5277 Query 241 CTACTTCAGCCCCAG-----GATGAGACGAG 266 || | || || ||| || |||||||| Sbjct 5276 ATATTACAACCTCAGATGGTGAAGAGACGAG 5246 >seq4771 Length=27405 Score = 168 bits (186), Expect = 1e-39 Identities = 140/171 (82%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 105 TCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAG 164 |||| |||||||||||||| || || ||||||||| ||| ||||| || || ||| Sbjct 19824 TCCCAGTCCTCTCGTACTAGAGAAAGGTCCTCTCAATGTTCTAACGCCAACATCGAATAT 19765 Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 ||||||||||||||| |||| |||| |||||||||| ||| || |||||||||||||||| Sbjct 19764 GGACCGAACTGTCTCACGACATTCTAAACCCAGCTCACGTACCGCTTTAATGGGCGAACA 19705 Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| || || |||| ||||||| | | || |||||| ||||| Sbjct 19704 GCCCAACCCTAGGAACATACTATAGCCCCAAGTGGCGAAGAGCCGGCATCG 19654 >seq15435 Length=148154 Score = 161 bits (178), Expect = 2e-37 Identities = 122/144 (85%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 ||||||||| || |||||||| |||||| ||||||||||||||| ||||||||||| Sbjct 76271 TCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGA 76330 Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||||||| ||| || ||||||||||| |||||||||| ||||| || |||| ||||| Sbjct 76331 ACCCAGCTCACGTACCACTTTAATGGGCAAACAGCCCAATCCTTGAAACATACTACAGCC 76390 Query 252 CCAGGATGAGACGAGCCGACATCG 275 ||||| | || |||||||||||| Sbjct 76391 CCAGGTGGCGAAGAGCCGACATCG 76414 >seq62886 Length=3827 Score = 141 bits (156), Expect = 1e-31 Identities = 134/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 105 TCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAG 164 |||| |||||||| ||||| ||| || ||||||||| || ||| | || |||||| Sbjct 3032 TCCCAGTCCTCTCATACTAGGGAAAGGTCCTCTCAATGCTCTAACGTCAACATCGGATAT 3091 Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 |||||||| |||||| |||| |||| |||||||||| | | || |||||||||||||| | Sbjct 3092 GGACCGAATTGTCTCACGACATTCTAAACCCAGCTCACATACCGCTTTAATGGGCGAATA 3151 Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| || || | || || ||| ||| | || ||||| ||||| Sbjct 3152 GCCCAACCCTCGGAACATGCTACAACCCTAGGTGGCGAAGAGCCAGCATCG 3202 >seq538277 Length=535 Score = 138 bits (152), Expect = 2e-30 Identities = 100/116 (86%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 ||||||||||||||||| || | ||||||| |||||||||| ||| || ||||||| ||| Sbjct 144 GATAGGGACCGAACTGTTTCACAACGTTCTAAACCCAGCTCACGTACCCCTTTAATTGGC 85 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| ||||||||| ||| |||||| || ||||| ||||||||||||||| Sbjct 84 GAACAGCCAAACCCTTGGAACCGCTTTCAGCTCCGGGATGGGACGAGCCGACATCG 29 >seq265213 Length=132 Score = 125 bits (138), Expect = 1e-26 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||| ||||||||| |||||||||||||||||||| || | |||| ||||||||||||| Sbjct 132 ACCAAACTGTCTCACGACGTTCTGAACCCAGCTCATGTAACACTTTGATGGGCGAACAGC 73 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||||| | || | ||||||||||| | ||||||||||| Sbjct 72 CCAACCCTTGGGACGTGCTACCGCCCCAGGATGTGTTAAGCCGACATCG 24 >seq154190 Length=112 Score = 123 bits (136), Expect = 4e-26 Identities = 89/103 (86%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 173 CTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACC 232 ||||||| ||||||| |||||||||||| ||| || |||||| ||||||||||| ||| Sbjct 1 CTGTCTCACGACGTTTTGAACCCAGCTCACGTACCACTTTAAATGGCGAACAGCCATACC 60 Query 233 CTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||| || ||||||||||||| || |||||||||||| Sbjct 61 CTTGGGACCGGCTACAGCCCCAGGATGTGATGAGCCGACATCG 103 >seq2024 Length=4771 Score = 116 bits (128), Expect = 6e-24 Identities = 149/205 (73%), Gaps = 13/205 (6%) Strand=Plus/Minus Query 78 ACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT-- 135 ||||| ||| || ||||||| |||||||| |||| ||||| |||||||| |||| Sbjct 4274 ACAACAGGTAAACAAGAGGTTAGTCCATCCAAATCCTTGCGTACAAAGGACAGATCCTTT 4215 Query 136 -----CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 ||| ||||||| | || | |||||||||| |||||||| |||||| || Sbjct 4214 TTCGACTCTAATTTCCCATA-----GAAG-ATAGGGACCGTACTGTCTCACGACGTACTT 4161 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||| |||||||| | |||| | ||||||||||| ||||||| | | || || | Sbjct 4160 AACCCAACTCGCGTGACCTTTTACTCGGCGAACAGCCGAACCCTTCCCAGCACCTACACC 4101 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||| | |||| |||||||| Sbjct 4100 GGGAGGATAGGTCGAGTCGACATCG 4076 >seq207021 Length=121 Score = 111 bits (122), Expect = 2e-22 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| ||||||||| ||| || |||| |||| Sbjct 119 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGAACTTAGCTACCCGGCAATGCCACTGGCG 60 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 ||||| ||| ||||||||||| ||||| ||||||||||||||||| | |||| || Sbjct 59 TGACAACCGGTACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCC 1 >seq16368 Length=10328 Score = 93.3 bits (102), Expect = 7e-17 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229 |||||||||| | |||||||||||||||||| ||| | |||||||||||||||||||| Sbjct 8348 GAACTGTCTCACAACGTTCTGAACCCAGCTCACGTACTGTTTTAATGGGCGAACAGCCCA 8407 Query 230 ACCCTTGGGACCTA 243 |||||||| || || Sbjct 8408 ACCCTTGGAACATA 8421 >seq535561 Length=481 Score = 86.0 bits (94), Expect = 1e-14 Identities = 100/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATG 66 |||||| ||||||||| |||||| | |||| |||| || | ||| |||||| | | Sbjct 348 GGCTTCCTACTTAGATGCTTTCAGCAGTGATCCGTTCCGCACATGGCTACCCAGCGTGTC 407 Query 67 CACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGG 126 | |||||| | |||||| |||||| ||| || | ||||||||||||||||||| || Sbjct 408 CCGTTGGCACGAGAACTGGCACACCAGCGGTGCGTGCCTCCCGGTCCTCTCGTACTAGGG 467 Query 127 ACAGCTCCTCTCAA 140 | | || ||||| Sbjct 468 AGATGGCCCCTCAA 481 >seq8560 Length=29517 Score = 82.4 bits (90), Expect = 1e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 || ||| |||||||| ||||||| | ||||||| ||||||||||| ||||||| || Sbjct 12934 CGTCGTATTGAACCCAACTCGCGTACTACTTTAATCGGCGAACAGCCGAACCCTTTCCAC 12875 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| |||| |||||| | ||| |||||||| Sbjct 12874 CTACTACAGCGGAAGGATGTAATGAGTCGACATCG 12840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 776625314940