Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq512363 179 9e-43 seq5501 104 6e-20 seq7179 100 7e-19 seq538379 98.7 2e-18 seq151655 96.9 8e-18 seq28274 84.2 5e-14 seq3135 82.4 2e-13 seq231972 75.2 3e-11 >seq512363 Length=306 Score = 179 bits (198), Expect = 9e-43 Identities = 155/191 (81%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||| || | ||| ||||||||| | ||||||||||||||| ||||||| ||||||| Sbjct 212 TTTACGACTCAGAAAGCCTTCTTCCTGCACGCGGCATGGCTGGGTCAGGCTCTCGCCCAT 153 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || |||||||||| |||||||||||||||||||||| || |||| ||||||| || ||| Sbjct 152 TGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCGGGCCCGTATCTCAGTGCCCGTG 93 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | || |||||||| | |||| |||||||||| ||| ||| ||||| || Sbjct 92 TGGGGGACCAGCCTCTCAGCTCCCCTAGTCATCGTCGCCTTGGTAAGCCGTTACCTTACC 33 Query 184 AACTAGCTAAT 194 ||||||||||| Sbjct 32 AACTAGCTAAT 22 >seq5501 Length=50376 Score = 104 bits (114), Expect = 6e-20 Identities = 206/302 (68%), Gaps = 31/302 (10%) Strand=Plus/Minus Query 112 TCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGC 171 ||||| | ||||| |||| ||||||| || ||||||||| |||| | |||| ||| || Sbjct 1058 TCAGTCCTAGTGTAGCTGATCATCCTTTCGGACCAGCTATTGATCATTGCCTTGGTAAGC 999 Query 172 CATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGG 231 ||| || | |||||||||||||| || | | | ||| || | || Sbjct 998 TATTGCCTCACCAACTAGCTAATCAGATGCGAGCCCCTCCTCAAGCG-GA---------T 949 Query 232 TCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCC 291 ||| ||| |||| ||| | || | | ||||||| ||||||| || ||| | || Sbjct 948 TCCTCCT-TTTG--CTTCTCAACCTACGGGATATTAGCAGCCGTTTCTAGGTGTTGTTCC 892 Query 292 CCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGC 351 || ||| ||||| ||| | |||||||||||| ||||||| | ||| || | Sbjct 891 CCCCCA-AGGGCAGGTTCTTACGCATTACTCACCCATCCGCCA------ATGGAAACACC 839 Query 352 AAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCT 411 | |||| |||| |||||||||||||||| || ||||||||||||||| || Sbjct 838 A-----CTTC------CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCT 790 Query 412 GA 413 || Sbjct 789 GA 788 >seq7179 Length=60104 Score = 100 bits (110), Expect = 7e-19 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 27728 TTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 27669 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 99 | | || |||| ||||| ||||||||||||| ||| Sbjct 27668 GCGGAAAATTCTCCACTACTGCCTCCCGTAGAAGT 27634 >seq538379 Length=538 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 ||| |||||| ||| |||||||| |||| |||| | || ||||| || ||||| ||| Sbjct 414 CACACGGCATTGCTTTGTCAGGCTTTCGCCTATTGCGAAAAATTCCTCA-TGCTGACTCT 356 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGAC 144 |||| |||| ||| |||||||||||| ||||||||| | | |||||||| ||| Sbjct 355 CGTAAGAGTTTGGGCCGTGTCTCAGTCCCAGTGTGGATAATTATCCTCTCGGAC 302 >seq151655 Length=112 Score = 96.9 bits (106), Expect = 8e-18 Identities = 85/105 (81%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| ||||||| || |||| ||| ||||| | ||| Sbjct 105 CTTTACAAGCGGCATTGCCCTTCTTCACACACGCGATATTGCTGGATCGGGCTTTCCCCC 46 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACC 106 | ||| |||||||||||||||||||| ||||| |||||| || || Sbjct 45 ACTGTCCAATATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCC 1 >seq28274 Length=12189 Score = 84.2 bits (92), Expect = 5e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 112 TCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGC 171 ||||| ||||||||| || |||||||||| ||||||||| |||| | |||| ||| || Sbjct 11133 TCAGTCCCAGTGTGGTTGATCATCCTCTCGGACCAGCTACTGATCATTGCCTTGGTAAGC 11192 Query 172 CATTACCCCGCCAACTAGCTAATC 195 ||| || | |||||||||||||| Sbjct 11193 TATTGCCTCACCAACTAGCTAATC 11216 >seq3135 Length=138032 Score = 82.4 bits (90), Expect = 2e-13 Identities = 92/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 19 GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCC 78 ||||||| | | || ||| || | | | | | | | ||||||||||| || |||||| Sbjct 56635 GCCTTCTACCTCCATGCGATATTGTTCCGTTCGACGTACGCCCATTGTGGAAAATTCCCG 56576 Query 79 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTC 138 |||||| ||||| ||||||| ||| | |||||||||| ||| ||| ||| |||| ||| Sbjct 56575 ACTGCTATCTCCCATAGGAGTTTGG-CTGTGTCTCAGTCCCAATGTACCTGATCATTCTC 56517 Query 139 TC 140 || Sbjct 56516 TC 56515 >seq231972 Length=125 Score = 75.2 bits (82), Expect = 3e-11 Identities = 74/95 (78%), Gaps = 8/95 (8%) Strand=Plus/Plus Query 320 CTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTG 379 ||||||||| ||||||||| | || || | ||| | | | |||||||||||| Sbjct 1 CTCACCCGTTCGCCACTCGCC------GC--CAGGTTGCCCCGCGCTGCCGTTCGACTTG 52 Query 380 CATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||| | || |||||||||||||||||||||| Sbjct 53 CATGTGTAAAGCATGCCGCCAGCGTTCAATCTGAG 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1215653391040