Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq512363 221 4e-55 seq464116 152 2e-34 seq19679 134 4e-29 seq415145 116 1e-23 seq7179 113 1e-22 seq538379 91.5 4e-16 seq974 91.5 4e-16 seq151655 87.8 5e-15 seq28274 87.8 5e-15 seq3135 84.2 7e-14 seq5501 78.8 3e-12 >seq512363 Length=306 Score = 221 bits (244), Expect = 4e-55 Identities = 218/285 (76%), Gaps = 20/285 (7%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||| Sbjct 22 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATGACTAGGGGAGCTGAGAGG 81 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 || || ||||| || ||||||| |||| || ||||||||||||||||||||| ||| Sbjct 82 CTGGTCCCCCACACGGGCACTGAGATACGGGCCCGACTCCTACGGGAGGCAGCAGTAGGG 141 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||||||| |||||||| | ||||||| |||| | |||||||| || |||||| ||| Sbjct 142 AATATTGGGCAATGGGCGAGAGCCTGACCCAGCCATGCCGCGTGCAGGAAGAAGGCTTTC 201 Query 348 -GGGTCGTAAAGCTCTGTCCTCAAGGAAGA-------------------TAATGACGGTA 387 | |||||||| || | || |||||| | ||||||||| Sbjct 202 TGAGTCGTAAACTGCTTTTGACAGGGAAGAATAAGGACTACGTGTAGTCTGATGACGGTA 261 Query 388 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA 432 | || || |||| |||||||||| ||||||||||||||||||| Sbjct 262 CCTGCAGAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTA 306 >seq464116 Length=216 Score = 152 bits (168), Expect = 2e-34 Identities = 109/124 (88%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 377 TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 436 |||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||| Sbjct 64 TAATGACGGTACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 123 Query 437 GTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTA 496 |||||| || ||||||| |||||||||| |||||||||| ||||| ||| ||||| || Sbjct 124 GTAGGGTGCGAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTTTTGTA 182 Query 497 AGTC 500 |||| Sbjct 183 AGTC 186 >seq19679 Length=43052 Score = 134 bits (148), Expect = 4e-29 Identities = 130/165 (79%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT--AATGACGGTACTTGAGGA 395 |||||||| |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 38975 GAAGGCCTACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGA 39034 Query 396 GGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||| Sbjct 39035 ATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATC 39094 Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||| | | |||||||||| || |||||||| || ||||||| Sbjct 39095 CGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 39138 >seq415145 Length=180 Score = 116 bits (128), Expect = 1e-23 Identities = 140/182 (77%), Gaps = 9/182 (5%) Strand=Plus/Plus Query 301 GGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC-GGGTCGTAAAGC 359 |||| ||||||||| | |||| |||||||| |||||||||| |||||||||| Sbjct 1 GGGCGAAAGCCTGACGGGGCAATGCCGCGTGGAGGATGAAGGCCCAATGGGTCGTAAACT 60 Query 360 TCTGTCC-TCA---AGGAAGATAATGACGGTACTTGAGGAGG-AAGCCCCGGCTAA-CTA 413 ||| | ||| | ||||| ||||||||||| ||| || |||| ||||||| | Sbjct 61 TCTTTAGATCAGAGACGAAGA-AATGACGGTACCTGAAGAACTAAGCATCGGCTAAACCC 119 Query 414 CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTA 473 |||||||||||||||||||| ||| || || ||||||||||||||| | | ||||||| Sbjct 120 CGTGCCAGCAGCCGCGGTAAGACGGGGGATGCGAGCGTTATCCGGAATGA-TTGGGCGTA 178 Query 474 AA 475 || Sbjct 179 AA 180 >seq7179 Length=60104 Score = 113 bits (124), Expect = 1e-22 Identities = 113/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 261 AAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGC 320 ||||| ||||||||||||| ||||| |||| || | |||||||| ||||||||| | ||| Sbjct 27632 AAACTTCTACGGGAGGCAGTAGTGGAGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGC 27691 Query 321 AACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TA 378 || |||||||| | |||||||| |||||||| || ||| | | | ||||| | Sbjct 27692 AATGCCGCGTGGAGGTAGAAGGCCTACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCA 27751 Query 379 ATGACGGTACTTGAGGAGGAAGCCCC 404 ||||||||| || |||| | ||||| Sbjct 27752 ATGACGGTATCTGGGGAGTAGGCCCC 27777 >seq538379 Length=538 Score = 91.5 bits (100), Expect = 4e-16 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| | || ||||| ||| |||||||||||| |||||||| |||| ||| ||||| Sbjct 306 GAGAGGATAATTATCCACACTGGGACTGAGACACGGCCCAAACTCTTACGAGAGTCAGCA 365 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 || ||||| || | |||| ||| ||||||||| ||||| |||| ||| Sbjct 366 -TGAGGAATTTTTCGCAATAGGCGAAAGCCTGACAAAGCAATGCCGTGTG 414 >seq974 Length=77894 Score = 91.5 bits (100), Expect = 4e-16 Identities = 78/95 (82%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 464 |||||||| |||||||||| ||||||||||| ||| || ||||||||||||||| | Sbjct 55192 GGCTAACTCTGTGCCAGCAGTCGCGGTAATACTGAGGATGCAAGCGTTATCCGGAATGA- 55134 Query 465 TGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | |||||||| || |||||||| || |||||| Sbjct 55133 TTGAGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGT 55099 >seq151655 Length=112 Score = 87.8 bits (96), Expect = 5e-15 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 ||||| ||||| |||||||||||||||||||| ||| |||| |||||| ||| |||||| Sbjct 8 ACTCCCACGGGGGGCAGCAGTGGGGAATATTGGACAGTGGGGGAAAGCCCGATCCAGCAA 67 Query 323 CGCCGCGTGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTCTGTC 365 |||||| | || ||||| | | | | | |||||||||| || Sbjct 68 TATCGCGTGTGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTC 112 >seq28274 Length=12189 Score = 87.8 bits (96), Expect = 5e-15 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||| | |||||||||||||||| ||| || |||||||||||| | |||||||||| | Sbjct 11223 CGCATTTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCAATGATCAGTAGCTGGT 11164 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGA 250 | |||||| ||||| ||||| ||| ||||| Sbjct 11163 CCGAGAGGATGATCAACCACACTGGGACTGA 11133 >seq3135 Length=138032 Score = 84.2 bits (92), Expect = 7e-14 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 ||||| ||||| | ||||||| |||||||||| | ||||||||||| ||||| |||| Sbjct 56515 GAGAGAATGATCAGGTACATTGGGACTGAGACACAG-CCAAACTCCTATGGGAGATAGCA 56573 Query 282 GTGGGGAATATTGCACAATGGGC 304 || |||||| || |||||||||| Sbjct 56574 GTCGGGAATTTTCCACAATGGGC 56596 >seq5501 Length=50376 Score = 78.8 bits (86), Expect = 3e-12 Identities = 72/91 (79%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||| |||||||||||||||||| ||| || |||||||||||| | ||||| |||| | Sbjct 968 CGCATCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCAATGATCAATAGCTGGT 1027 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGA 250 | || ||| ||||| || ||| | | ||||| Sbjct 1028 CCGAAAGGATGATCAGCTACACTAGGACTGA 1058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1489334520960