Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq331825 230 8e-58 seq507189 158 4e-36 seq283537 158 4e-36 seq344994 104 8e-20 seq454188 84.2 7e-14 seq436895 77.0 1e-11 seq20556 77.0 1e-11 >seq331825 Length=148 Score = 230 bits (254), Expect = 8e-58 Identities = 129/130 (99%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 1 TCGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 130 TCGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAGGTGATCTACCCAT 71 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 70 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 11 Query 121 TAGGGGATGA 130 |||||||||| Sbjct 10 TAGGGGATGA 1 >seq507189 Length=289 Score = 158 bits (174), Expect = 4e-36 Identities = 184/245 (75%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 250 CATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTG 309 ||||||||||||||||||||||||||||||||||| | || ||| | | ||||| Sbjct 1 CATTGCGACTTACCAAACCATTGCAAACTCCGAATACCGATGAGTGCGAGCTTGGGAGAC 60 Query 310 AGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGC 369 || ||||||||| ||||| | ||||| || || || ||| ||||||||| Sbjct 61 AGACGTCGGGTGCTAACGTCCGGCGTCAAGAGGGAAACAACCCAGACCGCCAGCTAAGGT 120 Query 370 CCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTG 429 ||| ||| ||||||| || |||||||| || ||||| |||| ||||||||| Sbjct 121 CCC-AAAGATTGGCTAAGTGGAA--AACGAAGTGGGAAGGCTAAAACAGTCAGGATGTTG 177 Query 430 GCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGC 489 |||| |||||||||| ||||||||||| |||||| |||||||| ||||| ||| || Sbjct 178 GCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTGATCGAGTCGTCCTGC 236 Query 490 GTGGA 494 | ||| Sbjct 237 GCGGA 241 >seq283537 Length=136 Score = 158 bits (174), Expect = 4e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 66 GGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGG 125 || |||||||| |||||||| | ||||||| |||||||||| |||||||||| | ||| Sbjct 1 GGCTGAAGGTGGGGTAACACCCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGG 60 Query 126 GATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGA 185 |||||||||||| |||||||||||||| || |||||| ||| ||||||||||||| ||| Sbjct 61 GATGAGCTGTGGCTAGGGGTGAAAGGCCAATCAAACTCGGAGATAGCTGGTTCTCCGCGA 120 Query 186 AAACTATTTAGGTAG 200 || ||||| |||||| Sbjct 121 AATCTATTGAGGTAG 135 >seq344994 Length=151 Score = 104 bits (114), Expect = 8e-20 Identities = 98/123 (80%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 79 GTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA--ATTAGGGGATGAGCTGTG 136 ||||||||| |||||||||||||| | |||||||| ||| || |||| || | Sbjct 151 GTAACACGCTGTGGAGGTCCGAACCAGTTTCCGTTGAAAAGGATTTGG--ATGACTTGAG 94 Query 137 GGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAG 196 |||||||||||||||| || |||||| |||||||||| || ||| |||||| |||| || Sbjct 93 GGTAGGGGTGAAAGGCCAATCAAACTAGGAAATAGCTCGTACTCCCCGAAATGTATTGAG 34 Query 197 GTA 199 ||| Sbjct 33 GTA 31 >seq454188 Length=206 Score = 84.2 bits (92), Expect = 7e-14 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| || ||||||||| ||||||||||| ||||| | ||| | || ||||| Sbjct 106 GACCCGAACCCGAGTGATCTAACCATGGCCAGGGTGAAGCTTTGGTGAGACTGAGTGGAG 165 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGT 135 | ||| ||| || ||||||||| || | ||||||||||| Sbjct 166 GCCCGTACCGACCGATGTTGAAAGATCGGCGGATGAGCTGT 206 >seq436895 Length=193 Score = 77.0 bits (84), Expect = 1e-11 Identities = 83/109 (76%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | || ||| ||||||||||||||| ||||| | ||||||| | | Sbjct 110 CGAGAGGGAAACAGCCCAGACCATCAGCTAAGGCCCCCAAATGGCCGCTAAGT--GGCAA 53 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCA 444 | || || || |||| ||||||| |||| ||| || | |||||||||| Sbjct 52 AGGATGTGGGAGTGCTCAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA 4 >seq20556 Length=45861 Score = 77.0 bits (84), Expect = 1e-11 Identities = 74/94 (79%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGA- 166 ||||||| |||||| ||||| ||||| ||||||||||||| || | ||||| || Sbjct 38962 AATGTTGCAAAATTCTCCGATGAACTGTGAAAAGGGGTGAAAGGCCAATCTAACTTAGAT 39021 Query 167 AATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 ||||||||| ||| ||||| ||||||| |||| Sbjct 39022 GATAGCTGGTATTCTGCGAAACCTATTTAAGTAG 39055 Score = 77.0 bits (84), Expect = 1e-11 Identities = 74/94 (79%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGA- 166 ||||||| |||||| ||||| ||||| ||||||||||||| || | ||||| || Sbjct 41055 AATGTTGCAAAATTCTCCGATGAACTGTGAAAAGGGGTGAAAGGCCAATCTAACTTAGAT 41114 Query 167 AATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 ||||||||| ||| ||||| ||||||| |||| Sbjct 41115 GATAGCTGGTATTCTGCGAAACCTATTTAAGTAG 41148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1680274844160