Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq525343 392 6e-107 seq12220 129 1e-27 seq59923 116 7e-24 seq13601 116 7e-24 seq41550 109 1e-21 seq30846 109 1e-21 seq2024 89.7 9e-16 seq9104 84.2 4e-14 seq59094 82.4 1e-13 seq273715 77.0 6e-12 seq17234 75.2 2e-11 seq8560 75.2 2e-11 >seq525343 Length=371 Score = 392 bits (434), Expect = 6e-107 Identities = 245/262 (94%), Gaps = 1/262 (0%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 203 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 202 AGCTGCGGGGAGCTAGCAAACGAGCTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 143 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 | || |||||| | | |||||||||||||| | | ||||||||||||||||||||||| Sbjct 142 CTTTATGGTCATCGTACACTGAATACATAGGTGTACGAAGCGAACGCGGCGAACTGAAAC 83 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 82 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 23 Query 241 GGGATGAGCCTT-TACGAGATA 261 |||||||||||| |||| |||| Sbjct 22 GGGATGAGCCTTGTACGTGATA 1 >seq12220 Length=6794 Score = 129 bits (142), Expect = 1e-27 Identities = 123/157 (78%), Gaps = 8/157 (5%) Strand=Plus/Plus Query 164 ACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAA 223 |||| | ||||||||||||||||||| ||| |||||| |||||||||||||| ||| || Sbjct 3334 ACGCAGTGAACTGAAACATCTAAGTAACTGTAGGAAAGGAAATCAACCGAGACTCCAGAA 3393 Query 224 GTAGTGGCGAGCGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCT 283 |||||||||||||||| ||| ||||| || | ||||||| || | |||| || Sbjct 3394 GTAGTGGCGAGCGAAACTGGACTAGCCT-------ATCGATGAATTGTTAATAGAATACT 3446 Query 284 CTGGAAATAGGAG-CCATAGCGGGTGATAGCCCCGTA 319 |||||| || || |||||| ||||| || || ||| Sbjct 3447 TTGGAAAAAGTAGTCCATAGAAGGTGACAGTCCTGTA 3483 >seq59923 Length=1448 Score = 116 bits (128), Expect = 7e-24 Identities = 123/158 (78%), Gaps = 8/158 (5%) Strand=Plus/Plus Query 164 ACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAA 223 |||||| ||||||||||||||||||| | | |||||| |||||||||||||| || || Sbjct 1289 ACGCGGTGAACTGAAACATCTAAGTAACCGTAGGAAAGGAAATCAACCGAGACTCTGGAA 1348 Query 224 GTAGTGGCGAGCGAAATGGGA-TGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCC 282 |||||||||||||||| || | |||| || | || | ||||||||| |||| | Sbjct 1349 GTAGTGGCGAGCGAAACCAGATTTAGCC--TAGCACATTG----ATTGATAGTAGAATAC 1402 Query 283 TCTGGAAATAG-GAGCCATAGCGGGTGATAGCCCCGTA 319 | |||||| || | |||||| ||| ||||||| ||| Sbjct 1403 TTTGGAAAAAGTAATCCATAGAAGGTAATAGCCCTGTA 1440 >seq13601 Length=26023 Score = 116 bits (128), Expect = 7e-24 Identities = 123/158 (78%), Gaps = 8/158 (5%) Strand=Plus/Minus Query 164 ACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAA 223 |||| | ||||||||||||||||||| ||| |||||| |||||||||||||| ||| || Sbjct 2310 ACGCAGTGAACTGAAACATCTAAGTAACTGTAGGAAAGGAAATCAACCGAGACTCCAGAA 2251 Query 224 GTAGTGGCGAGCGAAA-TGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCC 282 |||||||||||||||| ||| | ||||| || || || ||| |||| |||| Sbjct 2250 GTAGTGGCGAGCGAAACTGGATTTAGCCT-----AGCTAATT-AATAAGTAGTAGAATGT 2197 Query 283 TCTGGAAATAG-GAGCCATAGCGGGTGATAGCCCCGTA 319 | |||||| || | |||||| ||| ||||||| ||| Sbjct 2196 TTTGGAAAAAGCAATCCATAGAAGGTAATAGCCCTGTA 2159 >seq41550 Length=1017 Score = 109 bits (120), Expect = 1e-21 Identities = 174/244 (71%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| |||| | | || ||| ||| | ||||||| ||| | ||| ||| Sbjct 243 GGTGGATACCTAGGCGCTCAGAGACGAGGAAAGGCGTAGTAAGCGACGAAATGCTTTGGG 302 Query 70 GAG-TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 ||| ||| ||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 303 GAGATGA--AAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAA 354 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | ||| |||||||| ||| || | |||| || || ||| ||||||||||||| || Sbjct 355 AC--TGC-TGCTGAATCCATGGGCAGGCAAGAGACGACATGGCAAACTGAAACATCTTAG 411 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 |||| ||||||||||| ||| | |||||| ||||| || ||||||||||||| | Sbjct 412 TAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCTGTAGTAGCGGTGAGCGAAATGGGAGCA 471 Query 248 GCCT 251 |||| Sbjct 472 GCCT 475 >seq30846 Length=10447 Score = 109 bits (120), Expect = 1e-21 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 164 ACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAA 223 |||| | ||||||||||||||||||| ||| |||||| |||||||||||||| ||| || Sbjct 7616 ACGCAGTGAACTGAAACATCTAAGTAACTGTAGGAAAGGAAATCAACCGAGACTCCAGAA 7675 Query 224 GTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||||||||| |||| ||||| Sbjct 7676 GTAGTGGCGAGCGAAACTGGATTAGCCT 7703 >seq2024 Length=4771 Score = 89.7 bits (98), Expect = 9e-16 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 ||| |||||||||||| || || ||||||||||||||||||||||||| |||||||| Sbjct 637 GAAGTGAAACATCTAAATAACTCTAGGAAAAGAAATCAACCGAGATTCCATTAGTAGTGG 696 Query 231 CGAGCGAAATGGGATGAGCCTTTACGAGATAGTTGAA 267 ||||||| |||| ||||| || | ||| | ||| Sbjct 697 TGAGCGAACGTGGATTAGCCTATAATATATATTCGAA 733 >seq9104 Length=20787 Score = 84.2 bits (92), Expect = 4e-14 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| |||| |||| || ||| || |||||||||||||| ||||||| | Sbjct 9038 TGCTGAATCCATGGGTAGGCAAGAGACAACCTGGAGAACTGAAACATCTTAGTAGCTAGA 9097 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCG 236 | |||||||| ||| | ||||| | ||||||||| |||| Sbjct 9098 GCAAAAGAAAGCAAAAGCGATTCTCGTAGTAGTGGCAAGCG 9138 >seq59094 Length=1136 Score = 82.4 bits (90), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 21/230 (9%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || || || || |||||||| || | | ||||||||||||||| || ||||||| Sbjct 219 AGAGCGCACGGGGGATGCCTAGGGTCTCAGAGGCGATGAAGGACGCGATAAGCTGCGATA 160 Query 61 AGCTGCGGGGAGTGAGCAAACACAC-TTTGATCCGCAGATTTCCGAATGGGGAAACCCGG 119 |||| |||||| | ||| | || | || |||| |||||||||||||||| ||| Sbjct 159 AGCTCGGGGGAGAG-GCACATACTCGTTATATCCCGAGATTTCCGAATGGGGCAAC---- 105 Query 120 CCCTTTGGGTCATTGCATGCTGAATAC---------ATAGGTATGCAAAGCGAACGCGGC 170 ||||| || ||| | | || || || || || ||| |||| | Sbjct 104 CCCTTAGG----TTGAAGACCTAAGACCACTCCTTTATTGGACTG--GAGCAAACGTTGG 51 Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCC 220 |||||||||||||| |||| | |||||||||||| ||| ||||||| Sbjct 50 GAACTGAAACATCTCAGTACCGACAGGAAAAGAAAATAACAATGATTCCC 1 >seq273715 Length=134 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 83 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 24 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 23 GGCGAGCGAGAGCGGAT 7 >seq17234 Length=3955 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 |||| |||||| |||| || |||||| |||||||||||||| ||| ||||||| || Sbjct 1476 GAACCAAAACATTGTAGTAACTAGAGGAAAGGAAATCAACCGAGACTCCTAAAGTAGCGG 1417 Query 231 CGAGCGAAATGGGA 244 |||||||||| ||| Sbjct 1416 CGAGCGAAATAGGA 1403 >seq8560 Length=29517 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 |||| |||||| |||| || |||||| |||||||||||||| ||| ||||||| || Sbjct 10006 GAACCAAAACATTGTAGTAACTAGAGGAAAGGAAATCAACCGAGACTCCTAAAGTAGCGG 10065 Query 231 CGAGCGAAATGGGA 244 |||||||||| ||| Sbjct 10066 CGAGCGAAATAGGA 10079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913331212640