Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq512363 221 3e-55 seq29810 89.7 1e-15 seq257113 84.2 5e-14 >seq512363 Length=306 Score = 221 bits (244), Expect = 3e-55 Identities = 226/295 (77%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| ||||||||| |||||| || | |||||| Sbjct 300 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCTGCAGGTACCGTCATCAGACTACACGT 241 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | | || |||||| ||||| ||||||| | | | | ||||| |||| ||||| Sbjct 240 AGTCCTTATTCTTCCCTGTCAAAAGCAGTTTACGACTCAGAAAGCCTTCTTCCTGCACGC 181 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||| |||| |||||| |||||| |||||||||| ||||||||||||||||| Sbjct 180 GGCATGGCTGGGTCAGGCTCTCGCCCATTGCCCAATATTCCCTACTGCTGCCTCCCGTAG 121 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| || |||| ||||||| || ||||||||||| |||||||| |||||| ||| Sbjct 120 GAGTCGGGCCCGTATCTCAGTGCCCGTGTGGGGGACCAGCCTCTCAGCTCCCCTAGTCAT 61 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 ||| | || ||| ||||||||| || |||| |||||| |||| ||||||| Sbjct 60 CGTCGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGACCCGCAACCCCATC 6 >seq29810 Length=40436 Score = 89.7 bits (98), Expect = 1e-15 Identities = 115/156 (74%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCT-GCCTCCCGTAGGAGT- 184 ||||||||| || ||| || ||||||||||||||||||||| | |||| || | || Sbjct 22469 GCTGGTTCAACCTTTCGGTCAGTGACCAATATTCCTCACTGCTGGTTTCCCTTATGGGTA 22528 Query 185 ---TTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA-ACCCCTATCCAT 240 |||| ||| |||| ||||||||| || | |||||||||| || ||| || Sbjct 22529 GACTTGGCTGTTGTTTCAGAGCCAATGTGGTCGATCATCCTCTCAGATACGACTACGGAT 22588 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCT 276 | |||||||| | || ||||| | |||||||||| Sbjct 22589 CTTAGGCTAGTTAAGCAATTACCTCTCCTACTACCT 22624 >seq257113 Length=130 Score = 84.2 bits (92), Expect = 5e-14 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187 |||| ||| ||| ||| ||||| |||| |||| ||||||||||| |||||||| | | | Sbjct 81 CTGGGTCAAACTTGCGTTCATTGCCCAAGATTCTTCACTGCTGCCCCCCGTAGGGGCTCG 22 Query 188 GACCGTGTCTCAGTTCCAATG 208 |||| |||||||||||| ||| Sbjct 21 GACCTTGTCTCAGTTCCGATG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062901132480