Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq13885 333 4e-89 seq69449 307 2e-81 seq490273 192 1e-46 seq496754 167 4e-39 seq375991 161 2e-37 seq490026 129 1e-27 seq4686 125 1e-26 seq237622 107 3e-21 seq268132 98.7 2e-18 seq54683 95.1 2e-17 seq171044 91.5 2e-16 seq408867 87.8 3e-15 seq113249 84.2 4e-14 >seq13885 Length=3039 Score = 333 bits (368), Expect = 4e-89 Identities = 245/279 (88%), Gaps = 5/279 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||| Sbjct 2877 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 2820 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||| Sbjct 2819 GCCGCGAAGCTACCATCTGCTGGATAATAGCTGAACGCCTCTAAGCTAGAATCCATGCCA 2760 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||| | ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 2759 GAAAGCGGTGATTTTCTCCTGCACATCGTAGTCGGATACGAATAGGCCTCGGCCCTGAAT 2700 Query 181 CTTAGCAGGCCGGCAACGGGCGTC-CCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 |||||| || ||| ||| || ||| | | | ||| || ||| ||| ||| || |||| Sbjct 2699 CTTAGCTGGTCGGTAAC-GGTGTCGCGGTGAAAGTCCGTGGC-ATCAACTGACGTCTTGC 2642 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||| ||||||||||||||||||||||||||| ||||| Sbjct 2641 AATTTAACCATGCGCAGGGATAAATCCTTTGCATACGAC 2603 >seq69449 Length=2409 Score = 307 bits (340), Expect = 2e-81 Identities = 239/279 (86%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | Sbjct 1170 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCATT 1227 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1228 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1287 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179 ||||||||||||| | ||||||| ||||||||||||||||| ||| ||||| ||| Sbjct 1288 GAACGGGGTGATTTCCACCTGCAC----CAGTCGGATACGAATAGGCCTTTGGCCCAGAA 1343 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 ||||| ||||||||| || ||||| |||| ||||| | || |||| ||||| Sbjct 1344 CCTTACCAGGCCGGCGTTGGCAGTCCCATGGAA-ATTGGGGCTGTTCGCCGGCGTATTGC 1402 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| || |||||||| | ||||||||||||||||| Sbjct 1403 AATTGTACAGTGCGCAGGATTGAATCCTTTGCAGACGAC 1441 >seq490273 Length=251 Score = 192 bits (212), Expect = 1e-46 Identities = 169/208 (81%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 71 TACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTG 130 ||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| | Sbjct 1 TACCATCTGCTGGATAATAGCTGAACGCCTCTAAGTTAGAATCCATGCCAGAACGGGACG 60 Query 131 ATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC 190 ||| ||||| |||| ||||| |||||||||||||||||||||||| |||||||||||| Sbjct 61 ATTTTCTCCAGCACGTCGTACGAGGATACGAATAGGCTTCGGCCCCGGACCTTAGCAGGC 120 Query 191 CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCAT 250 | ||| || || |||| || | | | | |||||||| ||||||| || Sbjct 121 C-ATAACTCCTCTCTCGTAGAAGTCGGGAGAGGT-AATTGGCGGATAGCAATTTGACAGC 178 Query 251 GCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| ||||| ||||||||||||||||| Sbjct 179 GCGCTGGGATGAATCCTTTGCAGACGAC 206 >seq496754 Length=263 Score = 167 bits (184), Expect = 4e-39 Identities = 122/139 (88%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 141 GCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGCCGGCAA-CGG 199 ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || Sbjct 1 GCACATCGTAGTCGGATACGAATAGGCCTCGGCCCCGAACCTTAGCAGGCTGGCAATTGG 60 Query 200 GCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGA 259 | || |||||||| ||| | | |||||||||||||||||||||| |||||||||| Sbjct 61 GTGT-ACGCGGAAGTGCGTGCTCCCTAGCTGGCGGATTGCAATTTCACTTTGCGCAGGGA 119 Query 260 TAAATCCTTTGCAGACGAC 278 ||||||||||||| ||||| Sbjct 120 TAAATCCTTTGCATACGAC 138 >seq375991 Length=162 Score = 161 bits (178), Expect = 2e-37 Identities = 135/163 (83%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 98 CCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGAT 157 |||||||||||||||||||||||||| |||||||| | | ||| |||||||||||||||| Sbjct 1 CCTCTAAGTCAGAATCCATGCCAGAAAGGGGTGATCCCCCCCTACACATCGTAGTCGGAT 60 Query 158 ACGAATAGGCTTC-GGCCCCGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGC 216 |||||||||| | |||||||||||| ||||||||||| || ||| | | ||||| | Sbjct 61 ACGAATAGGCCCCTGGCCCCGAACCTCAGCAGGCCGGCGACCGGCCCCGGGTGGAAGTCC 120 Query 217 GGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGA 259 ||| | ||| |||| ||||||||||||| |||| ||||| Sbjct 121 CGGG-TCCGAGCCGGCGTATTGCAATTTCACAGTGCGTAGGGA 162 >seq490026 Length=251 Score = 129 bits (142), Expect = 1e-27 Identities = 104/123 (85%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||||| ||||| || |||| || |||| Sbjct 249 GTACGAGAGGAACCGTTGA-TTCACA-TAATTGGTCATTGCGCTTGGCTGAAAAGCCAGT 192 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| || |||||||| |||||||||||||||||||||||||||| | Sbjct 191 GGCGCGAAGCTACCATGTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTA 132 Query 121 GAA 123 ||| Sbjct 131 GAA 129 >seq4686 Length=7524 Score = 125 bits (138), Expect = 1e-26 Identities = 119/148 (80%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 28 TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTA 87 |||||||| |||||||||||| || | |||| |||||||||||||||| | ||||||| Sbjct 3768 TAATTGGTATTTGCGGCTGTCCGATCGGGCAATGCCGCGAAGCTACCACGCGTTGGATTA 3827 Query 88 TGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGAT-TCTCTCCTGCACAT 146 |||||||||||||||||| |||||||| ||| |||| | |||| | | ||| || || Sbjct 3828 TGGCTGAACGCCTCTAAGCCAGAATCCGTGCTAGAA-ACGATGATGTTTGTCCCGCGTAT 3886 Query 147 CGTAGTCGGATACGAATAG-GCTTCGGC 173 | |||||| || |||| |||||||| Sbjct 3887 CTTAGTCGAGTAAAGATAGAGCTTCGGC 3914 >seq237622 Length=126 Score = 107 bits (118), Expect = 3e-21 Identities = 102/126 (81%), Gaps = 6/126 (5%) Strand=Plus/Plus Query 138 CCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAACCTTAGCAGGCCGGCAA 196 ||| ||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||| | Sbjct 4 CCTACACATCGTAGTCGGATACGAATAGGCCTTTGGCCCTGAACCTTAGCAGGTTGGCGA 63 Query 197 CGGGCGTCCCGCGGAAG-CGCGGGG-CGCTCAGCTGGCGGATTGCAATTTCACCATGCGC 254 | ||| | | |||| | ||||| || ||||| || ||||||||||||| ||||| Sbjct 64 CCGGCTCCGGGTAGAAGTCCCGGGGTCG---AGCTGACGAATTGCAATTTCACAATGCGT 120 Query 255 AGGGAT 260 |||||| Sbjct 121 AGGGAT 126 >seq268132 Length=133 Score = 98.7 bits (108), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 5/119 (4%) Strand=Plus/Minus Query 91 CTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTA 150 |||||||||||||||||||||||| |||| ||||||| | || || |||| ||||| Sbjct 133 CTGAACGCCTCTAAGTCAGAATCCGTGCCGGAACGGGACCTTACT-ACCCGCACGTCGTA 75 Query 151 GTCGGATACGAATAGGCTTC-GGCCCCGAACCTTAGCAGGCCGGCAAC---GGGCGTCC 205 | ||||||||||||||| || |||| || |||| | |||| || ||| |||||||| Sbjct 74 GACGGATACGAATAGGCCTCTGGCCACGCACCTCAACAGGTTGGTAACGCTGGGCGTCC 16 >seq54683 Length=1688 Score = 95.1 bits (104), Expect = 2e-17 Identities = 133/181 (73%), Gaps = 8/181 (4%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||| | |||||||| | | | || ||| | || | Sbjct 547 GTACGAGAGGAACCGTTGG-TTCACA-TAATTGGTCAATTCAGTTGATTGAAACGTCAAT 604 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 || | ||||||||||| || |||||| ||||||||||||||||| |||||||||||| Sbjct 605 GCTGAGAAGCTACCATGTGTAGGATTACGGCTGAACGCCTCTAAGCCAGAATCCATGCTG 664 Query 121 GAACGGGGTGAT---TCTCTCCTGCACA-TCGTAGTC--GGATACGAATAGGCTTCGGCC 174 ||| | || ||| | || ||| | || || || | |||| ||||||||||||| Sbjct 665 GAAAGCGGCGATATGTTTCGCCTTCCCAGATGTTATCATGAGTACGTATAGGCTTCGGCC 724 Query 175 C 175 | Sbjct 725 C 725 >seq171044 Length=115 Score = 91.5 bits (100), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 7/119 (6%) Strand=Plus/Minus Query 145 ATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGCCGGCAACGGGCGTC 204 ||||||||||||||||||||||| ||||||| || ||||| |||| ||| || ||| || Sbjct 115 ATCGTAGTCGGATACGAATAGGCCTCGGCCCTGACCCTTATCAGGTTGGCGACTGGC-TC 57 Query 205 CCG--CGGAAGCGCGGGGCGCTC-AGCTGGCGGATTGCAATTTCACCATGCGCAGGGAT 260 | | | || | |||| || ||||| || ||||||||||||| ||||| |||||| Sbjct 56 CAGGTTGAAATCCTGGGG---TCAAGCTGACGAATTGCAATTTCACAATGCGTAGGGAT 1 >seq408867 Length=177 Score = 87.8 bits (96), Expect = 3e-15 Identities = 94/123 (76%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 156 ATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCG 215 |||||||||||| ||||||| ||| |||||| || |||| | | ||| | | | ||| Sbjct 1 ATACGAATAGGCCTCGGCCCTGAATCTTAGCTGGTTGGCATCTGTCGTGCGGTGAAAGTC 60 Query 216 CGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGAC 275 || || ||||| || ||||||||| || ||||| ||||||||||||||||| || Sbjct 61 CGTACGACT-AGCTGACGTCTTGCAATTTTACAATGCGTGGGGATAAATCCTTTGCATAC 119 Query 276 GAC 278 ||| Sbjct 120 GAC 122 >seq113249 Length=107 Score = 84.2 bits (92), Expect = 4e-14 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 93 GAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGAT-TCTCTCCT-GCACATCGTA 150 ||||||||||||||||||||||||||||||||||| |||| || ||| ||||||| || Sbjct 1 GAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGTTGATGCCTACCCTCGCACATCTTA 60 Query 151 GTCGGATACGAATAG 165 | || ||| |||||| Sbjct 61 GACGAATATGAATAG 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 814820002560